RepeatMap is a collection of time/memory efficient algorithms and data structures to enable rapid counting & querying of kmers (sequences of length k) counts in large sequences. E.g. a query could be "how many times is 'ACGTCATGGTAC' found in a genome."
Topic:
License:
Intended Audience:
User Interface:
Programming Language:
Registered:
Ratings and Reviews
Be the first to post a text review of RepeatMap. Rate and review a project by clicking thumbs up or thumbs down in the right column.
Project Feed
-
Code committed
-
Code committed
Rate and Review
Be the first person to add a text review.
Related Projects
-
mjsd
An implementation of the Markovian Jensen Shannon divergence (MJSD). The code recursively segments a sequence of symbols and then assesses the divergence of each segment with respect to the entire sequence.
-
JBoost
JBoost is a simple, robust system for classification. JBoost contains implementations of several boosting algorithms in an alternating decision tree framework. In addition, JBoost provides extensible software for adding more learning algorithms.
-
RepeatMap Actions
About SourceForge
Develop Software
Community
Copyright © 2010 Geeknet, Inc. All rights reserved. Terms of Use
