The RDP Classifier is a naive Bayesian classifier that can rapidly and accurately provides taxonomic assignments from domain to genus, with confidence estimates for each assignment. More information can be found at http://rdp.cme.msu.edu/.
- The RDP Classifier now allows classification of both bacterial and archaeal 16S rRNA sequences, and Fungal LSU sequences.
- The RDP MultiClassifier can classify multiple samples at one time and provides more output options. The assignment count in the hierarchical format for each taxon is similar to an OTU table generated by clustering tools.
- Use a command line class LeaveOneOutTesterMain to do leave-one-out testing for your own training taxonomy and sequences
- Contains command line tools to compare two libraries (LibCompare as offered on RDP website)
rdp-classifier works great