RELEASE NOTE: Get raxmlGUI 2.0 at the NEW PROJECT LOCATION: https://antonellilab.github.io/raxmlGUI/

raxmlGUI is a graphical user interface to RAxML, one of the most popular and widely used software for phylogenetic inference using maximum likelihood.

A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI: 10.1007/s13127-011-0056-0

Features

  • *NEW VERSION 2.0 NOW AVAILABLE: https://antonellilab.github.io/raxmlGUI/*
  • *version 1.5* adds the possibility to run analyses through CIPRES Science Gateway
  • The GUI includes RAxML executables
  • Multiplatform compatibility (Mac OS, Windows, Linux)
  • Requires Python 2.6, 2.7
  • Intuitive interface for data partitioning, and outgroup selection
  • Model selection for DNA, amino acid, binary, and multistate alignments
  • Automatic conversion NEXUS to PHYLIP (and vice versa)
  • Import FASTA files
  • Ancestral state reconstruction
  • "Bootstopping" function (Pattengale et al. 2010)
  • Interactive exclusion of sites
  • Combining multiple alignments with automatic partitioning
  • Interactive definition of topological constraints
  • Robinson-Foulds pairwise distances
  • Per-site likelihoods

Project Samples

Project Activity

See All Activity >

Categories

Bio-Informatics

License

GNU General Public License version 2.0 (GPLv2)

Follow raxmlGUI

raxmlGUI Web Site

Other Useful Business Software
Manage your entire team in one app Icon
Manage your entire team in one app

With Connecteam you can manage every aspect of your business on the go, no workstation needed.

Connecteam is an award-winning all-in-one employee management solution for daily operations, communications, and human resource management.
Rate This Project
Login To Rate This Project

User Reviews

Be the first to post a review of raxmlGUI!

Additional Project Details

Operating Systems

Linux, Mac, Windows

Intended Audience

Science/Research

User Interface

Tk

Programming Language

Python

Related Categories

Python Bio-Informatics Software

Registered

2010-03-02