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raxmlGUI

5.0 Stars (2)
130 Downloads (This Week)
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Description

A userfriendly graphical front-end for phylogenetic analyses using RAxML (Stamatakis, 2006). Please cite: Silvestro, Michalak (2012) - raxmlGUI: a graphical front-end for RAxML. Organisms Diversity and Evolution 12, 335-337. DOI: 10.1007/s13127-011-0056-0

raxmlGUI Web Site

Features

  • The GUI includes RAxML executables
  • Multiplatform compatibility (Mac OS, Windows, Linux)
  • Requires Python 2.6, 2.7
  • Intuitive interface for data partitioning, and outgroup selection
  • Model selection for DNA, amino acid, binary, and multistate alignments
  • Automatic conversion NEXUS to PHYLIP (and vice versa)
  • Import FASTA files
  • Ancestral state reconstruction
  • "Bootstopping" function (Pattengale et al. 2010)
  • Interactive exclusion of sites
  • Combining multiple alignments with automatic partitioning
  • Interactive definition of topological constraints
  • Robinson-Foulds pairwise distances
  • Per-site likelihoods

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User Reviews

  • thomasmcdonald
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Great project

    Posted 10/29/2012
  • williamhartman
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Reliable and stable, thanks raxmlgui

    Posted 09/16/2012
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Additional Project Details

Intended Audience

Science/Research

User Interface

Tk

Programming Language

Python

Registered

2010-03-02
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