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QTL Macro for SAS Software

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by cherny, lessem


This is a SAS(r) Software macro package for performing multipoint QTL mapping using the DeFries-Fulker multiple regression approach to unselected and selected samples.


http://qms2.sourceforge.net





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Release Date:

2001-06-03

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  • File released: /qms2 for Unix/1.00/qms2-1.00.tar.gz

    posted 3080 days ago

  • qms2 for Unix 1.00 file released: qms2-1.00.tar.gz

    1.00Added citation footnote. 0.10Added the Sham-Purcell modification of the Haseman-Elston model Double entry is not used for the Haseman-Elston basic and the Sham-Purcell model even if the data is double entered. This allows direct comparison of the DF, HE, and SP models from the same run. Set p to 1.0 for values of t from the wrong tail 0.09 Fix a bug that allowed individuals with missing phenotypes to be counted in the regressions. Updated the required citation in the documentation and license to be "in press" in Bioinformatics, instead of just a web citation. 0.08Documentation update. 0.07 Change as-is option to asis, and make it actually work. Include NOTES, ChangeLog, and How-To in distribution. Fix outdata bug and missing value bug. 0.06 The DF Augmented model now reports the t of interaction term. The beta of the interaction term is also reported. 0.05 The New Haseman-Elston model has been added. This model is (sib1 - mean(sib1))*(sib2 - mean(sib2)) = pihat. A typo that caused a bias in t was fixed. 0.04 This releases fixes a bug with the model degrees of freedom. Model DF now reflects the number of independent variables in the regression, which lets the script correctly compute the fit statistics for each model. 0.03 Completed features desired for first full release. Added plotting options to macro call. Added influence statistics. Added DeFries-Fulker Augmented model.

    posted 3081 days ago

  • File released: /qms2 for Unix/0.10/qms2-0.10.tar.gz

    posted 3138 days ago

  • qms2 for Unix 0.10 file released: qms2-0.10.tar.gz

    0.10Added the Sham-Purcell modification of the Haseman-Elston model Double entry is not used for the Haseman-Elston basic and the Sham-Purcell model even if the data is double entered. This allows direct comparison of the DF, HE, and SP models from the same run. Set p to 1.0 for values of t from the wrong tail 0.09 Fix a bug that allowed individuals with missing phenotypes to be counted in the regressions. Updated the required citation in the documentation and license to be "in press" in Bioinformatics, instead of just a web citation. 0.08Documentation update. 0.07 Change as-is option to asis, and make it actually work. Include NOTES, ChangeLog, and How-To in distribution. Fix outdata bug and missing value bug. 0.06 The DF Augmented model now reports the t of interaction term. The beta of the interaction term is also reported. 0.05 The New Haseman-Elston model has been added. This model is (sib1 - mean(sib1))*(sib2 - mean(sib2)) = pihat. A typo that caused a bias in t was fixed. 0.04 This releases fixes a bug with the model degrees of freedom. Model DF now reflects the number of independent variables in the regression, which lets the script correctly compute the fit statistics for each model. 0.03 Completed features desired for first full release. Added plotting options to macro call. Added influence statistics. Added DeFries-Fulker Augmented model.

    posted 3139 days ago

  • File released: /qms2 for Unix/0.09/qms2-0.09.tar.gz

    posted 3260 days ago

  • qms2 for Unix 0.09 file released: qms2-0.09.tar.gz

    0.09 Fix a bug that allowed individuals with missing phenotypes to be counted in the regressions. Updated the required citation in the documentation and license to be "in press" in Bioinformatics, instead of just a web citation. 0.08Documentation update. 0.07 Change as-is option to asis, and make it actually work. Include NOTES, ChangeLog, and How-To in distribution. Fix outdata bug and missing value bug. 0.06 The DF Augmented model now reports the t of interaction term. The beta of the interaction term is also reported. 0.05 The New Haseman-Elston model has been added. This model is (sib1 - mean(sib1))*(sib2 - mean(sib2)) = pihat. A typo that caused a bias in t was fixed. 0.04 This releases fixes a bug with the model degrees of freedom. Model DF now reflects the number of independent variables in the regression, which lets the script correctly compute the fit statistics for each model. 0.03 Completed features desired for first full release. Added plotting options to macro call. Added influence statistics. Added DeFries-Fulker Augmented model.

    posted 3261 days ago

  • File released: /qms2 for Unix/qms2-0.08.tar.gz/qms2-0.08.tar.gz

    posted 3296 days ago

  • qms2 for Unix qms2-0.08.tar.gz file released: qms2-0.08.tar.gz

    0.08 Documentation update. 0.07 Change as-is option to asis, and make it actually work. Include NOTES, ChangeLog, and How-To in distribution. Fix outdata bug and missing value bug. 0.06 The DF Augmented model now reports the t of interaction term. The beta of the interaction term is also reported. 0.05 The New Haseman-Elston model has been added. This model is (sib1 - mean(sib1))*(sib2 - mean(sib2)) = pihat. A typo that caused a bias in t was fixed. 0.04 This releases fixes a bug with the model degrees of freedom. Model DF now reflects the number of independent variables in the regression, which lets the script correctly compute the fit statistics for each model. 0.03 Completed features desired for first full release. Added plotting options to macro call. Added influence statistics. Added DeFries-Fulker Augmented model.

    posted 3297 days ago

  • File released: /qms2 for Windows/qms2-007.zip/qms2-007.zip

    posted 3329 days ago

  • qms2 for Windows qms2-007.zip file released: qms2-007.zip

    0.07 Change as-is option to asis, and make it actually work. Include NOTES, ChangeLog, and How-To in distribution. Fix outdata bug and missing value bug. 0.06 The DF Augmented model now reports the t of interaction term. The beta of the interaction term is also reported. 0.05 The New Haseman-Elston model has been added. This model is (sib1 - mean(sib1))*(sib2 - mean(sib2)) = pihat. A typo that caused a bias in t was fixed. 0.04 This releases fixes a bug with the model degrees of freedom. Model DF now reflects the number of independent variables in the regression, which lets the script correctly compute the fit statistics for each model. 0.03 Completed features desired for first full release. Added plotting options to macro call. Added influence statistics. Added DeFries-Fulker Augmented model.

    posted 3330 days ago

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