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Plasmodium Typing Utility Software

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The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.

PlaTypUS Web Site


  • Sequence alignment
  • SNV analysis
  • CNV analysis
  • Inter-sample comparison


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Additional Project Details

Intended Audience

Advanced End Users, Science/Research

Programming Language

C, Java, MATLAB, Perl


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