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picard-tools-1.94.zip 2013-07-01 43.6 MB 11 weekly downloads
README.txt 2013-07-01 593 Bytes 11 weekly downloads
Picard release 1.94 1 July 2013 - FixMateInformation.java: Eliminate extraneous open of SAM file. - SplitVcfs.java: Include option STRICT, which is true by default. If STRICT, throw an exception if something other than a SNP or Indel is found. Otherwise ignore that event. - FastqToSam.java: Allow for the ability to remove trailing /1s for unpaired reads in a FASTQ - Illumina bug workaround: Parser for TileMetricsOutput.bin ignore will discard duplicate entries. (Previously, if duplicate entries were found, the parser could get confused and couldn't collate the tile data properly.)
Source: README.txt, updated 2013-07-01