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picard-tools-1.78.zip 2012-10-09 35.7 MB 11 weekly downloads
README.txt 2012-10-09 812 Bytes 11 weekly downloads
Picard release 1.78 9 October 2012 - IlluminaBaseCallsToSam bug fixes: - Fix hang if a worker thread ran out of memory. - Fix bug in which failure of worker thread would result in successful program exit status. - Bug fix: Throw exception when barcodes that were not provided in libraray_params were read from tile. - Fluidigm: - IlluminaUtil.java: Added adapters for fluidigm access array. - IlluminaBasecallsToSam.java: Added fluidigm access array adapters to the default set of adapter sequences to look for and trim. - Make SamRecordIntervalIterator.close() idempotent. - SAM header version number: - Change version number output in SAM text header to 1.4. - Change ViewSam so that it outputs whatever was the version number in the input, rather than always replacing with CURRENT_VERSION.
Source: README.txt, updated 2012-10-09