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picard-tools-1.77.zip 2012-09-10 35.7 MB 11 weekly downloads
README.txt 2012-09-10 323 Bytes 11 weekly downloads
Picard release 1.77 10 September 2012 - CleanSam.java: Add additional clean-up: set MAPQ to 0 if a read is unmapped. - MergeBamAlignment.java: Add option ALIGNER_PROPER_PAIR_FLAGS to MergeBamAlignment to tell it to keep the aligner's notion of proper pair flag rather than overwriting it with MergeBamAlignment's notion.
Source: README.txt, updated 2012-09-10