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picard-tools-1.74.zip 2012-07-30 35.3 MB 55 weekly downloads
README.txt 2012-07-30 587 Bytes 11 weekly downloads
Picard release 1.74 30 July 2012 - Added a new "ProgressLogger" class that facilitates more useful and standard progress logging for any program that iterates through a stream of SAMRecords. Adapted most command line programs to use it. - Add support for targetedPcrMetrics and collected common HsMetrics and TargetedPcrMetrics behavior into TargetMetricsCollector - New program CollectTargetedPcrMetrics - MultiHitAlignedReadIterator.java: Handle case where an alignment record has no cigar elements that consume both the read and the reference (e.g. the read is all soft-clipped)
Source: README.txt, updated 2012-07-30