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picard-tools-1.40.zip 2011-02-15 8.3 MB 11 weekly downloads
README.txt 2011-02-15 701 Bytes 11 weekly downloads
Picard release 1.40 15 February 2011 - CollectMultipleMetrics.java: Made sure that the list of programs to run is unique. - Faster implementation of MeanQualityByCycle that cuts off about 2/3 of the runtime. - Adds a .equals method to MetricBase that compares the values for all public fields in the class; modifies MetricFile to have separate comparison methods for header, metrics, and histogram and to call all three of them in the .equals method. FormatUtil now handles Bytes. - QualityScoreDistribution.java, MetricsFile.java: Fixed to cope with the situation when there are no valid bases in an input sam/bam file. - Hack to fix strange problem with reading BAM via HTTP from SourceForge.
Source: README.txt, updated 2011-02-15