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picard-tools-1.112.zip 2014-04-21 52.4 MB 11 weekly downloads
README.txt 2014-04-21 712 Bytes 11 weekly downloads
Picard release 1.112 21 April 2014 - AbstractVCFCodec.java: Add ability to remap sample names for single-sample vcfs to the vcf codec. By calling setRemappedSampleName() on an instance of a vcf codec, you instruct it to replace the existing sample name in the vcf header with a new value. Attempting to use this feature with multi-sample or sites-only vcfs throws an error. - Make TextTagCodec.java and TagValueAndUnsignedArrayFlag.java public - Move BLOCK_COMPRESSED_EXTENSIONS to Tribble so all projects use the same set of extensions. - Create Tabix indices for block-compressed VCFs - Deprecate VariantContextWriterFactory. Convert uses of VariantContextWriterFactory to VariantContextWriterBuilder.
Source: README.txt, updated 2014-04-21