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picard-tools-1.101.zip 2013-10-21 45.9 MB
README.txt 2013-10-21 552 Bytes
Totals: 2 Items   45.9 MB 0
Picard release 1.101
21 October 2013

- explain_sam_flags.py: Add 0x800 (supplementary alignment) flag.

- LongLineBufferedReader.java: Fix copyright message.

- PedFile.java: Implementation of a simple ped-file parser and writer for PED files that contain family/pheno information but no genotypes.

- MathUtil.java: Added a couple of methods for 1) doing vector multiplication of two arrays and b) summing values in an array.

- VCFFileReader.java: Tidied up a little bit and then added a method to be able to query by region from the VCFFileReader.
Source: README.txt, updated 2013-10-21