picard
Description
A set of tools (in Java) for working with next generation sequencing data in the BAM (http://samtools.sourceforge.net) format.
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User Reviews
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Thanks for updates ;)
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Stable, full of great features and lightweight. This software is highly recommended!
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Fast and simple.
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Very nice app.
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The ability to run on windows is a major plus!
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I use this every single day! I really liked it.