PBSuite Icon

PBSuite

Software for Long-Read Sequencing Data from PacBio

5.0 Stars (3)
50 Downloads (This Week)
Last Update:
Download PBHoney_14.1.15.tgz
Browse All Files

Screenshots

Description

This currently hosts two projects created and maintained by Adam English. Soon we'll be moving this page and only using sourceforge to host files and ticketing.

PBJelly - the genome upgrading tool.
PBHoney - the structural variation discovery tool

----- PBJelly -----
Read The Paper
http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768

PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence draft assembles. PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes.

----- PBHoney -----
PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.

PBSuite Web Site

Features

  • Genome Assembly
  • Genome Upgrade
  • Structural Variation
  • Assembly Evaluation

Update Notifications





User Ratings

★★★★★
★★★★
★★★
★★
3
0
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
Write a Review

User Reviews

There are no 2 star reviews.

Additional Project Details

Intended Audience

Science/Research

Programming Language

Python

Registered

2012-05-21
Screenshots can attract more users to your project.
Features can attract more users to your project.

Icons must be PNG, GIF, or JPEG and less than 1 MiB in size. They will be displayed as 48x48 images.