PanOCT

Pan-genome Ortholog Clustering Tool

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Description

PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to accurately place proteins into orthologous clusters.

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Additional Project Details

Intended Audience

Science/Research, Advanced End Users, Developers, End Users/Desktop

User Interface

Command-line

Programming Language

Perl

Registered

2011-10-26
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