OrthoRBH

Rapidly identify orthologous cDNA sequences in related species

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Description

OrthoRBH is a tool/pipeline designed to identify families of protein coding transcripts/genes in related species using a reciprocal blast method. It can search through databases of full-length cDNAs, ESTs or mRNA-seq data. Optional assembly of candidate sequences allows assembly of contigs. It is suited to handling a mixture of EST and mRNA-seq sequence data. It performs batch blast searches, so it is ideal for large multi-gene families. After collecting candidate sequences, it performs sequence alignment and deposits sequences into a fasta sequence file for downstream molecular evolutionary analysis.

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User Reviews

  • masonarnold
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Stable and works.

    Posted 01/23/2013
  • collincarter
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    gracias

    Posted 11/02/2012
  • joshrogers
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Works and fast.

    Posted 09/24/2012
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Additional Project Details

Intended Audience

End Users/Desktop, Science/Research

Programming Language

Unix Shell

Registered

2012-07-08
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