ntx

Neutrality tests using the SNP site frequency spectrum

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BSD Linux

Description

Tests on "neutrality" are designed to detect systematic deviations from chance patterns in genetic data. This tool computes for a given SNP site frequency spectrum some standard test statistics like Tajima's D, Fay & Wu's H, etc. Additionally, the user may adapt the tests to specific demographies by specifying non-standard first and secondary moments. These can be obtained e.g. from simulations.

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Additional Project Details

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

C++

Registered

2012-11-07
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