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Hi,
I am aware that mummer is a tool primarily for aligning 2 genomes, but
I am looking for a way to find genes that are similar bewteen 2 genomes (the 2 genomes may be different - orthology, or the 2 input genomes may be the same - paralogy).
Is there an efficient way to achieve this using nucmer/promer?
My input are the lists of genes for the 2 genomes.
I have tried both nucmer...
2009-10-13 12:01:26 UTC by edelwais
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aphillippy made 1 file-release changes.
2009-09-21 19:51:03 UTC by aphillippy
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aphillippy made 1 file-release changes.
2009-09-21 19:50:02 UTC by aphillippy
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aphillippy committed patchset 119 of module MUMmer to the MUMmer CVS repository, changing 1 files.
2009-09-21 19:46:10 UTC by aphillippy
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aphillippy committed patchset 118 of module MUMmer to the MUMmer CVS repository, changing 1 files.
2009-09-21 19:45:30 UTC by aphillippy
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aphillippy made 1 file-release changes.
2009-09-09 22:33:02 UTC by aphillippy
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aphillippy committed patchset 117 of module MUMmer to the MUMmer CVS repository, changing 1 files.
2009-09-09 22:21:52 UTC by aphillippy
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aphillippy committed patchset 116 of module MUMmer to the MUMmer CVS repository, changing 2 files.
2009-09-09 22:14:37 UTC by aphillippy
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aphillippy committed patchset 115 of module MUMmer to the MUMmer CVS repository, changing 10 files.
2009-09-09 22:08:55 UTC by aphillippy
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aphillippy committed patchset 114 of module MUMmer to the MUMmer CVS repository, changing 6 files.
2009-09-09 20:32:29 UTC by aphillippy
