DownloadMspJI-seq_pipeline1.0 is pipeline for MspJI-digesting sequencing in DNA methylation study. Modification-dependent restriction endonuclease MspJI digestion coupled with next generation sequencing could estimate the methylation state of "CNNR" Cytosine location in the genome by mapping high throughput reads to the reference sequences. MspJI-seq_pipeline1.0 is designed to be a general-purpose mapping program to handle these special characteristics of MspJI-seq. Its alignment is based on the open source program SOAP (Short Oligo Alignment Program), and mCNNR sites recognition is performed by regular expression in perl.
Categories
Bio-InformaticsLicense
Creative Commons Attribution LicenseFollow MspJI-seq_pipeline1.0
Other Useful Business Software
ZAPTEST is the leading Enterprise software test automation and RPA tool. By skyrocketing efficiency in the software testing process, ZAPTEST will increase your company productivity, reduce costs, and achieve up to 10 X testing ROI.
Rate This Project
Login To Rate This Project
User Reviews
Be the first to post a review of MspJI-seq_pipeline1.0!