Medical Image Computing Workflow (MICFlow) is a simple, easy but flexible, extensible and powerful workflow system to automate medical image computing tasks such as segmentation, registration and analysis. It's pure Python so can be used on any platform
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Changelog: v0.4.1 [+] Added the CopyDerived method to the Images class. [+] Modules in the 'workflow' sub-directory is called first. [*] The daemon log file name now has the same time stamp as the log file name. [*] Now PCF option overwrite Command line options [-] Bugs related to the daemon log files. [-] Bugs related to the global options [-] Bugs related to the workflow path v0.4.0 This version is a major update. Workflows written for previous versions need some modifications. [+] Workflow definition files are searched first under the current MICFlow directory, and then under the 'workflow' sub-directory. [+] The FileNames key of the Image class accepts any number of recusive lists. [+] The FileNames key of the Image class accepts instances of Image class and the Derived attribute, or a list of them. [+] The Commands class can now handle the execution on mixed Image classes and strings. [+] Added the Include and Quit mechanism. [+] Added the FileNames key to the Derived attribute. [+] The MICFlow can now run in daemon mode under Linux. [-] Removed the Fileformat key. [-] Removed the connection between Fileformat and FileExt keys. [*] Changed the way the FileExt key is used. [*] The FileNames key of Image class is changed to a virtual key that returns the whole list of the full file names. [*} A few other bug fixes and enhancements.
MICFlow (Medical Image Computing Workflow ) v0.4.0 is a major update from v0.3.0. Workflow being directly debuggable is the big feature of MICFlow. It is also easy and flexible: you can just use any Python debug tool and IDE, such as Wing IDE, IDLE, DrPython, BOA Constructor, or Python's pdb module to debug a workflow. I use Wing IDE with which debugging is like a breeze in a manor similar to MATLAB IDE.
Medical Image Computing Workflow (MICFlow) is a simple, easy but flexible, extensible and powerful computing workflow system aim to automate large quantity and/or time-consuming medical image computing tasks such as segmentation, registration and analysis. The system includes a workflow engine, definition files, and process classes, all of which are written in Python. Naturally Python is the chosen built-in workflow script language. This makes any script and definition file in the workflow system possess the same power and extensibility as a standalone python program.
MICFlow v0.2.0 released.
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