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metawatt

beta

Binner for assembled metagenomes

4.8 Stars (4)
17 Downloads (This Week)
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Download MetaWatt.2.1.zip
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Description

The Metawatt binner is a graphical binning tool that makes use of multivariate statistics of tetranucleotide frequencies and interpolated Markov models. It also performs taxonomic assessment of binning quality (via BLAST). Created bins can be edited and exported as fasta. The Metawatt is implemented in Java SWING and minimally depends on Blast, Glimmer, the Batik library for the export of SVG graphics.

Citation: Strous M, Kraft B, Bisdorf R, TegetMeyer H (2012) The binning of metagenomic contigs for microbial physiology of mixed cultures. Frontiers in Microbial Physiology and Metabolism 3:410. doi: 10.3389/fmicb.2012.00410

metawatt Web Site

Features

  • Tetranucleotide binning of metagenomic contigs
  • Interpolated Markov Moidel binning of metagenomic contigs
  • Taxonomic Profiling of Detected Bins with blastp and blastn
  • Detection of Conserved Single Copy Genes
  • Detection and Phylogenetic Treeing of 16S rRNA genes
  • Interactive GC/coverage or coverage/coverage plots

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User Reviews

  • satanicodr
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    I really like the program. It was easy to install and to run. it will be good if they can support bigger samples (it runs out of memory with my 1.2 gb files) or have a batch mode to work with all samples from a folder. Overall a useful program

    Posted 02/08/2014
  • nolansanders
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Great product metawatt

    Posted 02/18/2013
  • dominicwarner
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    metawatt works great

    Posted 01/25/2013
  • henrycollins
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    good project metawatt

    Posted 12/25/2012
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Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Java Swing

Programming Language

Java

Registered

2012-10-15
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