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Workflow-based analysis built on IPython

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Pathomx is a tool for the analysis of omics data. Built on the MetaCyc database it provides an interactive map in which multiple pathways can be simultaneously visualised. Multiple annotations from the MetaCyc database are available including synonyms, associated reactions and pathways and database unification links.

Pathomx Web Site


  • Build analysis workflows from component tools
  • Dynamic threaded processing of data
  • Interactive visual workflow editor

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Additional Project Details


Dutch, English

Intended Audience

Science/Research, Education

User Interface


Programming Language

Python, JavaScript


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