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README 2011-05-09 3.0 kB 11 weekly downloads
-------------------------------------------------------------------------------- MetaGeneTree - README -------------------------------------------------------------------------------- This software computes likelihoods for infinitely-many-sites sequence data under multiple merger coalescents. The likelihood can be computed exactly or approximated via importance sampling. NOTICE: This software is stil in a developmental stage. It comes with absolutely no warranty of fitness for a particular purpose. If you encounter bugs, please contact the developers at http://metagenetree.sourceforge.net . REQUIREMENTS: This software is intended to run on any platform. So far it has been tested on i686. It just requires gcc version 2.95 or higher. LICENSE: This software is distributed under the GNU GENERAL PUBLIC LICENSE. You should have obtained a copy of the license in a file named 'COPYING' together with this software. -------------------------------------------------------------------------------- Building: -------------------------------------------------------------------------------- The archive 'metagenetree_0.1.2.tar.gz' containing the sourcecode can be obtained at 'http://metagenetree.sourceforge.net/'. Unpack the sourcecode into a directory of your choice via the command tar xzf metagenetree_0.1.2.tar.gz Change into the subdirectory 'metagenetree_0.1.2' and run ./configure make to build the program. The file 'users_guide.tex' can be transcribed with latex to get a short user's guide. If you have 'doxygen' available, the command doxygen my_doxyfile executed in the main directory will generate the class and sourcecode documentation in the directory 'html'. An archive 'metagenetree_code_documentation_html_v0.1.2.tar.gz' containing the class and sourcecode documentation can also be found at 'http://metagenetree.sourceforge.net/'. -------------------------------------------------------------------------------- Running: -------------------------------------------------------------------------------- After compiling successfully, the executable can be found at 'bin/MetaGeneTree'. Calling it without command line arguments or the argument '-h' outputs an overview of the possible invocations. For more information refer to the User's Guide available at http://metagenetree.sourceforge.net -------------------------------------------------------------------------------- ChangeLog: -------------------------------------------------------------------------------- = 0.1.2 = * Fixed: The description in the users guide of the command line parameter specifying the proposal distribution was incorrect. = 0.1.1 = * Fixed: Estimation of time to most recent common ancestor produced SEGFAULT = 0.1.0 = First release of the software. -------------------------------------------------------------------------------- More info at: http://metagenetree.sourceforge.net --------------------------------------------------------------------------------
Source: README, updated 2011-05-09