Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.
- support for ANDIMS/Netcdf, mzXML, mzData, mzML formats
- multiple visualizations for chromatograms, ms, alignments etc.
- preprocessing, eg. smoothing, filtering, baseline removal
- multiple alignment of GC/LC-MS data
- unsupervised peak group clustering
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