LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.
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* Feature: Enhanced JavaDoc. All public, private, protected (and default) fields and classes are now documented. * Bug Fix: Output semantics updated for correctness and clarity. 'Lake Categories' has been replaced by 'Environmental Variables', and 'Orthologs' has been replaced by 'Paralogs'.
* Feature: Enhanced JavaDoc. All public, private, protected (and default) fields and classes are now documented. * Bug Fix: Output semantics updated for correctness and clarity. 'Lake Categories' has been replaced by 'Environmental Variables', and 'Orthologs' has been replaced by 'Paralogs'.
Our initial public release of LineageEvolver, version 1.0 beta 1, is now available. Also, our project home page is now online and ready for traffic. Lastly, we have put together a quick front-end for LineageEvolver, in an effort to make the program more useable to the average user.
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