Just_Preprocess_My_Reads

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Linux

Description

Identifies rRNA, contaminants, trims in a standard fashion etc. Maintains read pairs. Built for fire-and-forget high throughput projects (terabytes of data).

Uses pbzip2, bowtie2, fastx_toolkit, samtools, fastqc, Trimmomatic (optional)

Just_Preprocess_My_Reads Web Site

Features

  • illumina pre-processing
  • contamination checking

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Additional Project Details

Intended Audience

Science/Research

Registered

2013-11-16
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