Just_Annotate_My_Genome

beta

Comprehensively annotate your non-model species genome.

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BSD Linux

Description

Uses an existing exonerate output or just predicted proteins (e.g. from Transdecoder or just a FASTA file) to prepare gene prediction inputs for Augustus, SNAP and geneid.
Exonerate is run (enabled via AAT) if it is not provided.
GTF file is produced to judge quality of annotation.
Sorts out high quality alignments from those that don't meet the criteria.

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Additional Project Details

Intended Audience

Science/Research, Advanced End Users

User Interface

Command-line

Programming Language

Perl

Registered

2013-10-24
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