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With the support of the NSF and ONR over the past few years we have developed a MATLAB tool that calculates the internal wave field generated by barotropic tidal flow of a nonlinearly stratified fluid past any arbitrary two-dimensional topography of finite extent
You can download a recent version as a .zip file or get up-to-date version via the svn version (svn checkout svn://svn.code.sf.net/p/itides/svn/trunk itides-svn).
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Great tool