Introminer

beta

Extracts intronic information from annotated genomic sequence

Add a Review
1 Download (This Week)
Last Update:
Download Arath1.gb.zip
Browse All Files
BSD Linux

Description

Created by Julie Shay and Claudio Slamovits.
Introminer reads a sequence file with genomic data that contains sequence and intron positions in genbank format. It extracts positional and sequence data as well as the intronic sequences and other important parameters to study gene architecture and intron evolution at a genome-wide scale.

Introminer Web Site

Features

  • Reads Genbank format sequence files containing genomic data (partial or full genome data)
  • Extracts various useful information on introns such as number, size, position in the genes and sequence
  • Detects introns with noncanonical borders
  • Output includes CDS sequences of all the genes (introns removed)

KEEP ME UPDATED

Write a Review

User Reviews

Be the first to post a review of Introminer!

Additional Project Details

Intended Audience

Science/Research

User Interface

.NET/Mono

Programming Language

Perl

Registered

2012-10-24
Screenshots can attract more users to your project.
Features can attract more users to your project.

Icons must be PNG, GIF, or JPEG and less than 1 MiB in size. They will be displayed as 48x48 images.