GIRAFFE Base Line Data Reduction Software is a set of python scripts and modulesand a C library to reduce FITS images produced by the Very Large Telescope (VLT)FLAMES instrument.
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version 1.13 TB released - pipe0.r/lst changes in default prams for pipes: wcalMast: option LOCADJUST enabled/added wcalOnly: prams CDOM CORR CORDV added extract, rebin: prams CORZMAX CDOM CORR CORDV added - t0.lst maximum intensity limit ZMAX during the CC now also used for extraction ans wcalSlit (should improve the accuracy of SIMCAL calibration) default wcalSlit now start with rebinning (was to dangerous if we do not start from current W-cal) - all csh scripts (../share/bin/): tmp files now go to /tmp so that GIR_CALIB could be used in read-only access - giSky.py : correct rejection of bad sky spectrum improvement of control plots - biggExt.py : corrected bug occuring with options '-N nnn -O ooo' on empty spectrum 'nnn' - giCrossC.py: the KW 'ESO TEL GEOLON' is now correctly interpreted as WEST when < 0 limited support to the output from ESO Paranal pipeline added 21/09/2004 version 1.12 released - update calibration data set; gircalib2.3 is now required - update test data set; girpipeTests1.12 is now required - setup selection now based on GRATING+WLEN0+ORDER (new KW SETUP) 20/07/2004 version 1.11 released - pipe "extract" - option SKYSS added - pipe "skyss" - sky modeling and subtraction added - option maxnumber increased from 10 to 15 (what we see upon 'pipe -t xxx') - option REBRANGE added to extract,wcalMast,wcalOnly,rebin 19/01/2004 version 1.10 released - numbering synchronized with girbldrs release - updated documentation - utility scripts update - jointable: gawk script moved to separate file ('word too long' on most SunOs installations) - column : -"- - row : -"- - compute : -"- - ptest : GIR_CALIB definition no more required - txt2r : more robust conversion - pipe script - supports .gz and .Z compressed format of raw files - some additionals parameters in pipes and somme better diagnosis - All pipes with option AVER bug corrected in command 150/160: input names are now FF...bSub1?? instead of (wrong) FF...bSub?? - All pipes with option SLM (mostly extract) bug corrected in command 502 corrected: command giRecNExt.py was (wrongly) skipped with SLM=slmremove - pipe 'extract' added option 'SPLIT' for split in individual spectra at the end of processing 15/10/2003 version 1.05 released (Validated with girbldrs-1.08 and gircalib2.1) - updated documentation - 'ptest' works now with calibration included in girpipeTests data (no calibration dependent minor changes in results) 26/06/2003 version 1.04 released (Validated with girbldrs-1.08 and gircalib2.0) - correctedd bug in buildall.sh [gsimond] - add utility script 'whead' to handle W-solutions [ablecha] - documentation: upgrade + add expert maintenance see in $GIR_PIPE/doc/ README.wcalMast, README.locMast, docpiped.ps, docpipeD.ps [ablecha] - dark-subtraction and image reconstruction option validated in 'extract' [ablecha] 02/06/2003 version 1.03 released - generated new test results (change in the statistic computation) - moved gawk programs from scripts to separate files $GIR_PIPE/config/xxxn.gawk to prevent 'Word too long' on SUN instalation - script 'showf' new options - script 'report' largely simplified - pipeD0.lst example 2 of biasMast corrected - pipet0.lst description of parameter RAW clarified - script 'files' accepts non-rdb input - script 'fhead' produces now allways the output with same columns - correction in most of rdb command (header handling) - uninstall generated automatically - Added an uninstall script [gsimond] - MANIFEST file added [gsimond] 13/05/2003 version 1.02 released - CHANGELOG file added - file $GIR_PIPE/config/pipe0.r is no more temporary; therefore w-access to this directory is no more required - test call to pipe such as 'pipe -d extract' do not require the GIR_CALIB any more - girp_New.. renamed 'girp.pl' as given in documentation - girp.pl calls #! /usr/bin/env perl now - pipe 'shell if option protected' 12/05/2003 version 1.01 released
21/06/2006 version 1.13.1 released - mostly to correct problems with Linux Ubuntu 16/05/2006 version 1.13 released 06/02/2006 version 1.13 released internal release - giRecDLocfit.py: change 'girLine*.tfits' to 'girLineThAr*.tfits' - adjlocalization.c handle when no line found in line table (GS) - pyadjloc_wrap.c add test for error in adjlocalization (GS) - girbldrs.*sh fix a bug for unset MANPATH in Linux (GS) - DFS.py corrected a typo: was SLIT instead of slitName (GS) - DFS.py corrected BUGG for ARGUS mode object selection: spectraPresentFlag clipped 0,1 (AB) - giSky.py complete elimination (all bins invalid) of one or several sky spectra supported (AB) - giRecNWcal2.py BUG corrected: automatic generation of input error filename now OK also for .oxspt. (OPTIMALy extracted) files (AB) - giCrossC.py (AB) BUG corrected: when several files on input and --sgtable not given the slitGeoTableInFile auto-generated for the 1-st frame was used for all frames BUG corrected: log spectra-spectra correlation using other than default step added option '--seq' BUG corrected KW 'OGL PRO QC SLIT RV NSP' set on output slitGeoTableOut -add help on flagged (eliminated spectra) -add option --outPeak - giCheck.py more verbosity for fits output - giArithm.py Bugg corrected in option -Z min:max:in (worked only together with -S option) (AB) - biggExt.py better default behaviour for -Y option (AB) - giRecCosmicMC.py segmentation fault (using PRESCX instead of PRESCY) corrected (GS) add sort after input fileName globing to keep compatibility with shell ordering (AB) 21/09/2004 version 1.12 released - Tables.py always put table keywords in primary header - DFS.py giGetSlitGeometry() now also takes care of setup name - DFS.py giGetSlitGeometry() now also returns table header keywords - DFS.py giGetWaveCoeffTable() nows also returns table header keywords - pyrebin_wrap.c was not returning the good rebinning steps - giRecPsfLoc.py now check and convert old format of localization files - giRecNLoc2.py add QC KWs production and write on loc files - giRecNext.py add QC KWs on extracted file - giRecBinn2.py add QC KWs on rebinned output file - giRecBinn2.py call to giGetSlitGeometry() now also takes care of setup name - giRecBinn2.py now check and convert old format of localization files - giRecDLocfit.py call to giGetSlitGeometry() now also takes care of setup name - giRecDLocfit.py now check and convert old format of localization files - giRecNWcal2.py call to giGetSlitGeometry() now also takes care of setup name - giRecNWcal2.py now check and convert old format of localization files - giCrossC.py add QC KWs on updatewd slitGeo table - giCheck.py add missing simultaneous calibration spectra declaration/auto-detection - biggExt.py add .gif output - bug fixed giCrossC.py - error in time (~ exposure time) of RV correction giSky.py - sky subtracted twice from sky fibres in Medusa mode 20/07/2004 version 1.11 released - calibration download splitted on per-setup basis - RELEASENOTES added - documentation updated - giArithm.py; bug of parsing (case filename begins with "/") corrected bug in order of 'imports' corrected - giRecImage.py; giGetFibreList called with specific slitGeoFile - giCheck.py; write KW 'OGL PROC SETUP' - giSky.py; added recipe [ablecha] - moved to cfitsio-2.490 [gsimond] - moved to Numeric 23.3 [gsimond] - rebinning.c, pyrebin_wrap.c, Frames.py, giSplitS2dFrame.py: add code to add/handle wlen data to extracted spectra [gsimond] - DFS.py: add code to handle new setup with 'A' and 'B' [gsimond] - psfProfile.py: add PCOURBMAX quality KW and modify variance expression - biasCorrection.py: add BIASECONV kw (e- conversion status) - spectraLocalization.py: add COURBMAX quality KW - spectraExtraction.py: modify variance expression - Dictionary.py: add new EXP MODE keyword - giRecCosmicMC.py: add new AVGNFRAMES keyword - add support for gcc-3.4 in setup.py files [gsimond] - BLDRS.py, __init__.py: add CROSSC,Check and Sky keyword aliases [gsimond] 15/01/2004 version 1.10 released - copy version girbldrs-1.09-patched Thu Nov 6 15:00:28 MET 2003 [ablecha] - new scripts to add or extract tables from GIRAFFE frames [gsimond] - new script to split S2D frames [gsimond] - add sometimes missing unittest module to arrayfrombuffer [gsimond] - Fitsio.py: modify readTable() so it can handle array in a cell [gsimond] - Frames.py: add methods to add and extract frames tables [gsimond] - add README.MacOSX [gsimond] - port to MacOSX (small modifs in C code and install scripts) [gsimond] - girbldrs.sh: add DYLD_FALLBACK_LIBRARY_PATH for MacOSX [gsimond] - girbldrs.csh: add DYLD_FALLBACK_LIBRARY_PATH for MacOSX [gsimond] - buildall.sh: add DYLD_FALLBACK_LIBRARY_PATH for MacOSX [gsimond] - modify giraffe-4.0 build process to use GNU libtool [gsimond] - modify provided cfitsio build process to use GNU libtool [gsimond] - giRecBinn2.py: add 'FULL' value to bnrange option [gsimond] - DFS.py: support for invalid fibres flagged in girSlitGeo [ablecha] - giRecImage.py adjusted/validated for ARGUS [ablecha] - files INSTALL_EXAMPLE (.SunOS,.Linux merged) and TESTING updated - iqefunc.[ch]: move all floats to doubles to get same results on all architectures [gsimond] - rebinning.c: was not computing the good maximum values for xx,xx0 (-1 added) 15/10/2003 version 1.09 released - complete updated programmer documentation (PostScript & PDF) - complete updated user documentation (PostScript & PDF) - validation with gircalib2.1 and pipe1.05 [ablecha] - python import 'MA' (masked array) no more used - giCrossC.py [ablecha] bug correction: RA from OzPoz is in degree -> must be coverted to standard units (hours) before calling RV velocity correction geocentric correction included now in bary/helio-centric options --clean option for on-the-fly cleaning (sky removal mainly) -R option: added parameter for final parabolic fit (option) -s : suppress header printout realistic error estimate (rve) and error plot - biggExt.py biggH.py - minor enhancements [ablecha] - giCheck.py option '-O' to produce spectra/object list on any frame [ablecha] - giArithm.py better processing of divide by 0 [ablecha] - remove default GIR_CALIB initialization from startup scripts - update to Numeric-23.0 [gsimond] - add test for GIR_ROOT in REQUIRED/install_XXX scripts [gsimond] - replace buggy cfitsio 2.440 by version 2.460 [gsimond] 27/06/2003 version 1.08 released - Validation with period 72 data; gircalib2.0 and pipe1.04 [ablecha] - girbldrs.[c]sh.in do not setenv GIR_CALIB anymore [ablecha] removed also useless girbldrs.[c]sh - biggExt.py -O SKY option uses regular expression [ablecha] - biggLoc.py auto-scaling improved [ablecha] - giCrossC.py corr. bug rvCorrection, improved graphics [ablecha] - giRecImage.py image-reconstruction bug removed + validated [ablecha] - giCheck option '-O' produces list of spectra + info on any GIRAFFE image [ablecha] - giCheck now convert automagically to new format [gsimond] - updated Fitsio.py errmsg for file not found [gsimond] - updated Frames.py to convert old to new format [gsimond] - updated MANIFEST files [gsimond] - was not exporting GIR_PIPE in girbldrs.sh [gsimond] - correct a bug about MANPATH in girbldrs.csh [gsimond] - modify configure to get ext pkg from obswww.unige.ch [gsimond] - MatrixOperations.c, dark.c [gsimond]: more sophisticated mode computation - added computeImageMode() to dark.c,dark.h - computeMode() now use matrix_hist_mode() in mathutils_wrap.c 02/06/2003 version 1.07 released - biggH.py [blecha] new utility python script to plot multiple histograms - buildall.sh [gsimond]: added --config-only and --install-only configall.sh and instalall.sh added (links to buildall.sh) - Frames.py [gsimond]: added checkKeywords() method in class girFrame - Dictionary.py [gsimond]: added new aliases for ever changing PIXSIZE keywords - MatrixOperations.c [gsimond]: change equal comparison to epsilon comparison, best for real numbers - use 'sh ./configure' instead './configure' in buildall.sh and Makefiles (was issuing a strange error on some machines???) [gsimond] - giCheck.py [blecha] SLIT KW not checked now for DPR~BIAS or DARK - giArithm.py, tstpalette.py [ablecha]: 1-st line set to #!/usr/bin/env python (bug on SUN) 17/05/2003 version 1.06 released - Dictionary.py [gsimond]: new aliases to take care of new frame header - Frames.py [gsimond]: some more tests to still work with old frame header 13/05/2003 version 1.05 released - CHANGELOG file added - buildall.sh: added --config-only command line option - biggles-1.6.3/setup.py.in, pysmongo-1.0/setup.py.in, pygiraffe-4.0/setup.py.in, pyfitsio-0.99/setup.py.in: modifs to compiles on Solaris using GNU gcc - pyrecipes-3.1/giRecEstPix2.py, pyrecipes-3.1/giRecEstPix3.py, pyrecipes-3.1/giRecEstPixC.py, pyrecipes-3.1/giRecNWcal.py, pyrecipes-3.1/giRecWcalLines.py, pyrecipes-3.1/giRecWcal.py, pyscripts-3.1/giCosmicM.py, pyscripts-3.1/giNasmyth.py, pyscripts-3.1/giSky.py were not used and have been removed 12/05/2003 version 1.04 released
This a small update of girbldrs 1.13 mostly concerning problems with the Linux Ubuntu distribution see CHANGELOGS for details
This is a patch for girbldrs pipe version 1.13 to correct a bug in giSky
21/06/2006 version 1.13.1 released - mostly to correct problems with Linux Ubuntu 16/05/2006 version 1.13 released 06/02/2006 version 1.13 released internal release - giRecDLocfit.py: change 'girLine*.tfits' to 'girLineThAr*.tfits' - adjlocalization.c handle when no line found in line table (GS) - pyadjloc_wrap.c add test for error in adjlocalization (GS) - girbldrs.*sh fix a bug for unset MANPATH in Linux (GS) - DFS.py corrected a typo: was SLIT instead of slitName (GS) - DFS.py corrected BUGG for ARGUS mode object selection: spectraPresentFlag clipped 0,1 (AB) - giSky.py complete elimination (all bins invalid) of one or several sky spectra supported (AB) - giRecNWcal2.py BUG corrected: automatic generation of input error filename now OK also for .oxspt. (OPTIMALy extracted) files (AB) - giCrossC.py (AB) BUG corrected: when several files on input and --sgtable not given the slitGeoTableInFile auto-generated for the 1-st frame was used for all frames BUG corrected: log spectra-spectra correlation using other than default step added option '--seq' BUG corrected KW 'OGL PRO QC SLIT RV NSP' set on output slitGeoTableOut -add help on flagged (eliminated spectra) -add option --outPeak - giCheck.py more verbosity for fits output - giArithm.py Bugg corrected in option -Z min:max:in (worked only together with -S option) (AB) - biggExt.py better default behaviour for -Y option (AB) - giRecCosmicMC.py segmentation fault (using PRESCX instead of PRESCY) corrected (GS) add sort after input fileName globing to keep compatibility with shell ordering (AB) 21/09/2004 version 1.12 released - Tables.py always put table keywords in primary header - DFS.py giGetSlitGeometry() now also takes care of setup name - DFS.py giGetSlitGeometry() now also returns table header keywords - DFS.py giGetWaveCoeffTable() nows also returns table header keywords - pyrebin_wrap.c was not returning the good rebinning steps - giRecPsfLoc.py now check and convert old format of localization files - giRecNLoc2.py add QC KWs production and write on loc files - giRecNext.py add QC KWs on extracted file - giRecBinn2.py add QC KWs on rebinned output file - giRecBinn2.py call to giGetSlitGeometry() now also takes care of setup name - giRecBinn2.py now check and convert old format of localization files - giRecDLocfit.py call to giGetSlitGeometry() now also takes care of setup name - giRecDLocfit.py now check and convert old format of localization files - giRecNWcal2.py call to giGetSlitGeometry() now also takes care of setup name - giRecNWcal2.py now check and convert old format of localization files - giCrossC.py add QC KWs on updatewd slitGeo table - giCheck.py add missing simultaneous calibration spectra declaration/auto-detection - biggExt.py add .gif output - bug fixed giCrossC.py - error in time (~ exposure time) of RV correction giSky.py - sky subtracted twice from sky fibres in Medusa mode 20/07/2004 version 1.11 released - calibration download splitted on per-setup basis - RELEASENOTES added - documentation updated - giArithm.py; bug of parsing (case filename begins with "/") corrected bug in order of 'imports' corrected - giRecImage.py; giGetFibreList called with specific slitGeoFile - giCheck.py; write KW 'OGL PROC SETUP' - giSky.py; added recipe [ablecha] - moved to cfitsio-2.490 [gsimond] - moved to Numeric 23.3 [gsimond] - rebinning.c, pyrebin_wrap.c, Frames.py, giSplitS2dFrame.py: add code to add/handle wlen data to extracted spectra [gsimond] - DFS.py: add code to handle new setup with 'A' and 'B' [gsimond] - psfProfile.py: add PCOURBMAX quality KW and modify variance expression - biasCorrection.py: add BIASECONV kw (e- conversion status) - spectraLocalization.py: add COURBMAX quality KW - spectraExtraction.py: modify variance expression - Dictionary.py: add new EXP MODE keyword - giRecCosmicMC.py: add new AVGNFRAMES keyword - add support for gcc-3.4 in setup.py files [gsimond] - BLDRS.py, __init__.py: add CROSSC,Check and Sky keyword aliases [gsimond] 15/01/2004 version 1.10 released - copy version girbldrs-1.09-patched Thu Nov 6 15:00:28 MET 2003 [ablecha] - new scripts to add or extract tables from GIRAFFE frames [gsimond] - new script to split S2D frames [gsimond] - add sometimes missing unittest module to arrayfrombuffer [gsimond] - Fitsio.py: modify readTable() so it can handle array in a cell [gsimond] - Frames.py: add methods to add and extract frames tables [gsimond] - add README.MacOSX [gsimond] - port to MacOSX (small modifs in C code and install scripts) [gsimond] - girbldrs.sh: add DYLD_FALLBACK_LIBRARY_PATH for MacOSX [gsimond] - girbldrs.csh: add DYLD_FALLBACK_LIBRARY_PATH for MacOSX [gsimond] - buildall.sh: add DYLD_FALLBACK_LIBRARY_PATH for MacOSX [gsimond] - modify giraffe-4.0 build process to use GNU libtool [gsimond] - modify provided cfitsio build process to use GNU libtool [gsimond] - giRecBinn2.py: add 'FULL' value to bnrange option [gsimond] - DFS.py: support for invalid fibres flagged in girSlitGeo [ablecha] - giRecImage.py adjusted/validated for ARGUS [ablecha] - files INSTALL_EXAMPLE (.SunOS,.Linux merged) and TESTING updated - iqefunc.[ch]: move all floats to doubles to get same results on all architectures [gsimond] - rebinning.c: was not computing the good maximum values for xx,xx0 (-1 added) 15/10/2003 version 1.09 released - complete updated programmer documentation (PostScript & PDF) - complete updated user documentation (PostScript & PDF) - validation with gircalib2.1 and pipe1.05 [ablecha] - python import 'MA' (masked array) no more used - giCrossC.py [ablecha] bug correction: RA from OzPoz is in degree -> must be coverted to standard units (hours) before calling RV velocity correction geocentric correction included now in bary/helio-centric options --clean option for on-the-fly cleaning (sky removal mainly) -R option: added parameter for final parabolic fit (option) -s : suppress header printout realistic error estimate (rve) and error plot - biggExt.py biggH.py - minor enhancements [ablecha] - giCheck.py option '-O' to produce spectra/object list on any frame [ablecha] - giArithm.py better processing of divide by 0 [ablecha] - remove default GIR_CALIB initialization from startup scripts - update to Numeric-23.0 [gsimond] - add test for GIR_ROOT in REQUIRED/install_XXX scripts [gsimond] - replace buggy cfitsio 2.440 by version 2.460 [gsimond] 27/06/2003 version 1.08 released - Validation with period 72 data; gircalib2.0 and pipe1.04 [ablecha] - girbldrs.[c]sh.in do not setenv GIR_CALIB anymore [ablecha] removed also useless girbldrs.[c]sh - biggExt.py -O SKY option uses regular expression [ablecha] - biggLoc.py auto-scaling improved [ablecha] - giCrossC.py corr. bug rvCorrection, improved graphics [ablecha] - giRecImage.py image-reconstruction bug removed + validated [ablecha] - giCheck option '-O' produces list of spectra + info on any GIRAFFE image [ablecha] - giCheck now convert automagically to new format [gsimond] - updated Fitsio.py errmsg for file not found [gsimond] - updated Frames.py to convert old to new format [gsimond] - updated MANIFEST files [gsimond] - was not exporting GIR_PIPE in girbldrs.sh [gsimond] - correct a bug about MANPATH in girbldrs.csh [gsimond] - modify configure to get ext pkg from obswww.unige.ch [gsimond] - MatrixOperations.c, dark.c [gsimond]: more sophisticated mode computation - added computeImageMode() to dark.c,dark.h - computeMode() now use matrix_hist_mode() in mathutils_wrap.c 02/06/2003 version 1.07 released - biggH.py [blecha] new utility python script to plot multiple histograms - buildall.sh [gsimond]: added --config-only and --install-only configall.sh and instalall.sh added (links to buildall.sh) - Frames.py [gsimond]: added checkKeywords() method in class girFrame - Dictionary.py [gsimond]: added new aliases for ever changing PIXSIZE keywords - MatrixOperations.c [gsimond]: change equal comparison to epsilon comparison, best for real numbers - use 'sh ./configure' instead './configure' in buildall.sh and Makefiles (was issuing a strange error on some machines???) [gsimond] - giCheck.py [blecha] SLIT KW not checked now for DPR~BIAS or DARK - giArithm.py, tstpalette.py [ablecha]: 1-st line set to #!/usr/bin/env python (bug on SUN) 17/05/2003 version 1.06 released - Dictionary.py [gsimond]: new aliases to take care of new frame header - Frames.py [gsimond]: some more tests to still work with old frame header 13/05/2003 version 1.05 released - CHANGELOG file added - buildall.sh: added --config-only command line option - biggles-1.6.3/setup.py.in, pysmongo-1.0/setup.py.in, pygiraffe-4.0/setup.py.in, pyfitsio-0.99/setup.py.in: modifs to compiles on Solaris using GNU gcc - pyrecipes-3.1/giRecEstPix2.py, pyrecipes-3.1/giRecEstPix3.py, pyrecipes-3.1/giRecEstPixC.py, pyrecipes-3.1/giRecNWcal.py, pyrecipes-3.1/giRecWcalLines.py, pyrecipes-3.1/giRecWcal.py, pyscripts-3.1/giCosmicM.py, pyscripts-3.1/giNasmyth.py, pyscripts-3.1/giSky.py were not used and have been removed 12/05/2003 version 1.04 released
a new version 1.13 of girbldrs and girbldrs-pipe has been released
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