Gene-Environment iNteraction Simulator 2

A tool able to simulate gene-environment and gene-gene interactions.

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Description

Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered.
The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the Simulator more intuitive, the input parameters are expressed as standard epidemiological quantities. GENS2 is written in Python language and takes advantage of operators and modules provided by the simuPOP simulation environment. It can be used through a graphical or a command-line interface.

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  • roamato
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    GENS2 documentation page down Project page containing GENS2 documentation is temporarily unavaible due to SourceForge problems with Hosted Apps service. We apologize for the inconvenience.

    Posted 07/29/2009
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Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Command-line, Console/Terminal, Tk, wxWidgets

Programming Language

MATLAB, Python

Registered

2009-07-29
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