Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.
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I tried the software. It works out of the box. It's very fast, and the results are superior to other pocket finding algorithms I have tested.
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BisKit
Biskit is a python library for structural bioinformatics research. It simplifies the analysis ofmacromolecular structures, protein complexes, and molecular dynamicstrajectories and offers a platform for the rapid integration of external programs.
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