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FOCIS

FOCIS finds features for functional follow-up

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Description

FOCIS (Feature Overlapper for Chromosomal Interval Subsets) performs an interval-based screen of a database of genomic features – ChIP-seq peaks, motif matches, and others – for overlap enrichment at a specific subset of genomic regions relative to a dataset-matched background. It was recently used to discover a novel enhancer that mediates drug resistance in melanoma.

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Additional Project Details

Intended Audience

Science/Research

Programming Language

Perl

Registered

2012-07-25
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