Easyfig

5.0 Stars (2)
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Description

Easyfig enables the creation of linear comparison figures showing BLAST matches between multiple genomic loci or prokaryote genomes. Easyfig has an easy-to-use graphical user interface and is able to launch BLAST searches interactively.

Easyfig Web Site

Features

  • BLAST comparisons between multiple genomic regions or prokaryote chromosomes drawn in bmp or svg format.
  • BLAST searches (tBLASTn and tBLASTx) can be precomputed or launched from within the application.
  • BLAST results can be filtered according to user-defined settings.
  • Allows user-defined colour, size and shape of genomic features and user-defined colour range for BLAST matches.
  • Generates custom scale bar, BLAST identity and feature legends.
  • Supports histograms or line graphs based on custom data or generated by Easyfig (e.g. GC-content, GC-skew).
  • Compatible with EMBL and GenBank annotation file formats, legacy BLAST and BLAST+.
  • Windows, Mac OSX and Linux executables available (launches GUI by double-clicking); Linux,Unix,Windows cmd version available (launches GUI from terminal window); Command-line only version available (no GUI)

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ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 0 / 5
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User Reviews

  • williamdanis
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Easyfig is excellent! Thanks.

    Posted 06/23/2013
  • oid-2861925
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    I especially like the fact that Easyfig lets you display subregions within genbank/embl files with such ease.

    Posted 12/08/2010
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Additional Project Details

Intended Audience

Science/Research

Programming Language

Python

Registered

2010-04-28
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