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• dysii-toy 1.0.0 file released: dysii-toy-1.0.0.tar.gz

  posted 365 days ago

• dysii-doublewell 1.0.0 file released: dysii-doublewell-1.0.0.tar.gz

  posted 365 days ago

• File released: /dysii-toy/1.0.0/dysii-toy-1.0.0.tar.gz

  posted 365 days ago

• File released: /dysii-doublewell/1.0.0/dysii-doublewell-1.0.0.tar.gz

  posted 365 days ago

• dysii 1.4.0 file released: dysii-1.4.0.tar.gz

  ------------------------------------------------------------------------ r591 | s0565918 | 2008-12-17 15:12:13 +0000 (Wed, 17 Dec 2008) | 1 line Updated docs ------------------------------------------------------------------------ r590 | s0565918 | 2008-12-17 15:09:40 +0000 (Wed, 17 Dec 2008) | 1 line Regressed all tests and fixed issues, updated docs slightly ------------------------------------------------------------------------ r589 | s0565918 | 2008-12-15 17:46:51 +0000 (Mon, 15 Dec 2008) | 1 line Updated references ------------------------------------------------------------------------ r588 | s0565918 | 2008-12-15 17:45:24 +0000 (Mon, 15 Dec 2008) | 1 line Updated references ------------------------------------------------------------------------ r587 | s0565918 | 2008-12-15 17:31:43 +0000 (Mon, 15 Dec 2008) | 1 line ------------------------------------------------------------------------ r586 | s0565918 | 2008-12-15 17:29:28 +0000 (Mon, 15 Dec 2008) | 1 line Updated config.py file for release ------------------------------------------------------------------------ r585 | s0565918 | 2008-12-15 17:27:09 +0000 (Mon, 15 Dec 2008) | 1 line Added missing tests to release build, updated version number ------------------------------------------------------------------------ r584 | s0565918 | 2008-12-15 17:26:36 +0000 (Mon, 15 Dec 2008) | 1 line Reviewed documentation for 1.4.0 release ------------------------------------------------------------------------ r583 | s0565918 | 2008-12-15 17:11:27 +0000 (Mon, 15 Dec 2008) | 1 line Updated doc files for 1.4.0 ------------------------------------------------------------------------ r582 | s0565918 | 2008-12-15 17:03:50 +0000 (Mon, 15 Dec 2008) | 1 line ------------------------------------------------------------------------ r581 | s0565918 | 2008-12-15 17:03:29 +0000 (Mon, 15 Dec 2008) | 1 line ------------------------------------------------------------------------ r580 | s0565918 | 2008-12-15 17:03:10 +0000 (Mon, 15 Dec 2008) | 1 line ------------------------------------------------------------------------ r579 | s0565918 | 2008-12-15 17:02:48 +0000 (Mon, 15 Dec 2008) | 1 line ------------------------------------------------------------------------ r578 | s0565918 | 2008-12-15 17:02:31 +0000 (Mon, 15 Dec 2008) | 1 line Updated build scripts ------------------------------------------------------------------------ r577 | s0565918 | 2008-12-15 16:39:33 +0000 (Mon, 15 Dec 2008) | 1 line Added installation guide INSTALL.txt file ------------------------------------------------------------------------ r576 | s0565918 | 2008-11-16 15:24:50 +0000 (Sun, 16 Nov 2008) | 1 line Added methods to change regularised resampler norm and kernel ------------------------------------------------------------------------ r575 | s0565918 | 2008-10-04 14:15:17 +0100 (Sat, 04 Oct 2008) | 1 line Updated AutoCorrelator test ------------------------------------------------------------------------ r574 | s0565918 | 2008-10-04 14:14:57 +0100 (Sat, 04 Oct 2008) | 1 line Fixed autocorrelator for multiple dimensions ------------------------------------------------------------------------ r573 | s0565918 | 2008-09-29 15:06:40 +0100 (Mon, 29 Sep 2008) | 1 line Added sanity check for SAME_PROPOSAL flag, allowing convenient use on first use of proposal also ------------------------------------------------------------------------ r572 | s0565918 | 2008-09-29 13:04:33 +0100 (Mon, 29 Sep 2008) | 1 line ------------------------------------------------------------------------ r571 | s0565918 | 2008-09-24 15:06:22 +0100 (Wed, 24 Sep 2008) | 1 line ------------------------------------------------------------------------ r570 | s0565918 | 2008-09-16 16:49:33 +0100 (Tue, 16 Sep 2008) | 1 line Fixed memory leaks reported by valgrind ------------------------------------------------------------------------ r569 | s0565918 | 2008-09-15 00:04:06 +0100 (Mon, 15 Sep 2008) | 1 line Corrected clone when root node null ------------------------------------------------------------------------ r568 | s0565918 | 2008-09-14 00:39:37 +0100 (Sun, 14 Sep 2008) | 1 line kd tree code reviewed ------------------------------------------------------------------------ r567 | s0565918 | 2008-09-14 00:17:48 +0100 (Sun, 14 Sep 2008) | 1 line Fixed symmetry bug in crossTreeDensity() ------------------------------------------------------------------------ r566 | s0565918 | 2008-09-13 22:41:27 +0100 (Sat, 13 Sep 2008) | 1 line Removed clear() of partial derivative matrices, as often these are zero_matrix, for which clear() is not implemented ------------------------------------------------------------------------ r565 | s0565918 | 2008-09-13 22:25:02 +0100 (Sat, 13 Sep 2008) | 1 line Updated stochastic differential solvers with return value optimisation idiom ------------------------------------------------------------------------ r564 | s0565918 | 2008-09-12 16:35:34 +0100 (Fri, 12 Sep 2008) | 1 line Bypassed distributed methods for single node situations, inlined DiracPdf functions ------------------------------------------------------------------------ r563 | s0565918 | 2008-09-11 18:26:04 +0100 (Thu, 11 Sep 2008) | 1 line Corrected memory leaks using valgrind ------------------------------------------------------------------------ r562 | s0565918 | 2008-09-11 17:37:07 +0100 (Thu, 11 Sep 2008) | 1 line Attempts to fix memory leaks ------------------------------------------------------------------------ r561 | s0565918 | 2008-09-09 00:26:11 +0100 (Tue, 09 Sep 2008) | 1 line Fixed bug in assignment operator for leaf nodes ------------------------------------------------------------------------ r560 | s0565918 | 2008-09-08 23:40:30 +0100 (Mon, 08 Sep 2008) | 1 line Corrected unsigned int instead of template type in calculation of delta ------------------------------------------------------------------------ r559 | s0565918 | 2008-09-08 13:32:35 +0100 (Mon, 08 Sep 2008) | 1 line Added second template parameter, even though unused, to permit compatibility with all StochasticDifferentialModels ------------------------------------------------------------------------ r558 | s0565918 | 2008-09-08 13:30:08 +0100 (Mon, 08 Sep 2008) | 1 line ------------------------------------------------------------------------ r557 | s0565918 | 2008-09-05 17:49:24 +0100 (Fri, 05 Sep 2008) | 1 line Resolved issues with kernel forward-backward smoother for double well model ------------------------------------------------------------------------ r556 | s0565918 | 2008-09-04 18:02:20 +0100 (Thu, 04 Sep 2008) | 1 line Added EM fit of GaussianMixturePdf to DiracMixturePdf ------------------------------------------------------------------------ r555 | s0565918 | 2008-09-04 16:26:27 +0100 (Thu, 04 Sep 2008) | 1 line Added constructor for kernel two-filter smoother when no measurement at starting time ------------------------------------------------------------------------ r554 | s0565918 | 2008-09-04 16:18:22 +0100 (Thu, 04 Sep 2008) | 1 line Corrected template compile errors ------------------------------------------------------------------------ r553 | s0565918 | 2008-09-04 15:26:13 +0100 (Thu, 04 Sep 2008) | 1 line Updated for new usage idioms ------------------------------------------------------------------------ r552 | s0565918 | 2008-09-04 15:25:50 +0100 (Thu, 04 Sep 2008) | 1 line Tested all optimisation options in kernel smoothers, fixed initialisation of kernel two-filter smoother ------------------------------------------------------------------------ r551 | s0565918 | 2008-09-03 20:32:47 +0100 (Wed, 03 Sep 2008) | 1 line Updated kernel smoother tests to use NO_STANDARDISATION optimisation flag ------------------------------------------------------------------------ r550 | s0565918 | 2008-09-03 20:32:30 +0100 (Wed, 03 Sep 2008) | 1 line Updated kernel smoothers with optimisations ------------------------------------------------------------------------ r549 | s0565918 | 2008-09-03 12:34:18 +0100 (Wed, 03 Sep 2008) | 1 line Added test for new dual, self and cross- tree kernel density evaluations ------------------------------------------------------------------------ r548 | s0565918 | 2008-09-03 12:33:31 +0100 (Wed, 03 Sep 2008) | 1 line Efficient dual, self and cross- tree kernel density evaluation implementations ------------------------------------------------------------------------ r547 | s0565918 | 2008-09-01 16:57:05 +0100 (Mon, 01 Sep 2008) | 1 line Added shareOf() function ------------------------------------------------------------------------ r546 | s0565918 | 2008-09-01 16:56:48 +0100 (Mon, 01 Sep 2008) | 1 line Updated documentation ------------------------------------------------------------------------ r545 | s0565918 | 2008-09-01 15:06:33 +0100 (Mon, 01 Sep 2008) | 1 line Updated for uncoupling of smoothers from filters ------------------------------------------------------------------------ r544 | s0565918 | 2008-09-01 15:04:39 +0100 (Mon, 01 Sep 2008) | 1 line Uncoupled smoothers from filters ------------------------------------------------------------------------ r543 | s0565918 | 2008-08-31 14:44:53 +0100 (Sun, 31 Aug 2008) | 1 line Updated for library changes ------------------------------------------------------------------------ r542 | s0565918 | 2008-08-31 14:44:14 +0100 (Sun, 31 Aug 2008) | 1 line Minor fixes/updates ------------------------------------------------------------------------ r541 | s0565918 | 2008-08-31 14:42:13 +0100 (Sun, 31 Aug 2008) | 1 line ------------------------------------------------------------------------ r540 | s0565918 | 2008-08-31 14:41:46 +0100 (Sun, 31 Aug 2008) | 1 line Made getDimensions() non-virtual, moved up into StochasticProcess ------------------------------------------------------------------------ r539 | s0565918 | 2008-08-31 14:41:18 +0100 (Sun, 31 Aug 2008) | 1 line ------------------------------------------------------------------------ r538 | s0565918 | 2008-08-31 14:41:10 +0100 (Sun, 31 Aug 2008) | 1 line Made getDimensions() non-virtual, moved up into Pdf ------------------------------------------------------------------------ r537 | s0565918 | 2008-08-31 14:40:50 +0100 (Sun, 31 Aug 2008) | 1 line Added multi-weight algorithm ------------------------------------------------------------------------ r536 | s0565918 | 2008-08-27 16:30:35 +0100 (Wed, 27 Aug 2008) | 1 line Updated mobile robot model to work with kernel smoothers ------------------------------------------------------------------------ r535 | s0565918 | 2008-08-27 16:17:31 +0100 (Wed, 27 Aug 2008) | 1 line Minor improvements and corrections ------------------------------------------------------------------------ r534 | s0565918 | 2008-08-27 16:17:07 +0100 (Wed, 27 Aug 2008) | 1 line Corrected assertion that prune node has at least one component, not required for distributed trees ------------------------------------------------------------------------ r533 | s0565918 | 2008-08-27 16:16:30 +0100 (Wed, 27 Aug 2008) | 1 line Corrected use of installed headers, not local headers, so could not compile with already being installed ------------------------------------------------------------------------ r532 | s0565918 | 2008-08-25 16:09:34 +0100 (Mon, 25 Aug 2008) | 1 line Updated kernel smoothers for library changes ------------------------------------------------------------------------ r531 | s0565918 | 2008-08-25 16:09:23 +0100 (Mon, 25 Aug 2008) | 1 line Updated kernel two-filter and kernel forward-backward smoothers to use dual-tree algorithm and improved interfaces, added header for kernel density convenience methods, other restructuring updates ------------------------------------------------------------------------ r530 | s0565918 | 2008-08-25 15:50:27 +0100 (Mon, 25 Aug 2008) | 1 line Updated for library changes ------------------------------------------------------------------------ r529 | s0565918 | 2008-08-19 14:44:48 +0100 (Tue, 19 Aug 2008) | 1 line Corrected auxiliary weight error in auxiliary particle filter ------------------------------------------------------------------------ r528 | s0565918 | 2008-08-17 23:00:12 +0100 (Sun, 17 Aug 2008) | 1 line Minor updates from observations working on Eddie ------------------------------------------------------------------------ r527 | s0565918 | 2008-08-17 22:53:19 +0100 (Sun, 17 Aug 2008) | 1 line ------------------------------------------------------------------------ r526 | s0565918 | 2008-08-16 17:02:20 +0100 (Sat, 16 Aug 2008) | 1 line ------------------------------------------------------------------------ r525 | s0565918 | 2008-08-16 17:01:47 +0100 (Sat, 16 Aug 2008) | 1 line ------------------------------------------------------------------------ r524 | s0565918 | 2008-08-16 17:00:57 +0100 (Sat, 16 Aug 2008) | 1 line ------------------------------------------------------------------------ r523 | s0565918 | 2008-08-16 17:00:23 +0100 (Sat, 16 Aug 2008) | 1 line Made arguments const ------------------------------------------------------------------------ r522 | s0565918 | 2008-08-16 16:59:47 +0100 (Sat, 16 Aug 2008) | 1 line Added additional getter methods ------------------------------------------------------------------------ r521 | s0565918 | 2008-08-16 16:58:51 +0100 (Sat, 16 Aug 2008) | 1 line Added additional getter functions ------------------------------------------------------------------------ r520 | s0565918 | 2008-08-15 14:22:21 +0100 (Fri, 15 Aug 2008) | 1 line Corrections for renaming of stratified resampler ------------------------------------------------------------------------ r519 | s0565918 | 2008-08-15 14:01:55 +0100 (Fri, 15 Aug 2008) | 1 line Updated for determinnistic resampler renaming ------------------------------------------------------------------------ r518 | s0565918 | 2008-08-15 14:01:35 +0100 (Fri, 15 Aug 2008) | 1 line Renamed deterministic resampler to stratified resampler ------------------------------------------------------------------------ r517 | s0565918 | 2008-08-12 18:09:04 +0100 (Tue, 12 Aug 2008) | 1 line Corrected bugs in redistributeBySpace() where a node may have zero components in a prune node ------------------------------------------------------------------------ r516 | s0565918 | 2008-08-12 18:08:30 +0100 (Tue, 12 Aug 2008) | 1 line Fixed hidden writeLine() function in derived classes of Writer, made Writer use pass by reference not pass by value ------------------------------------------------------------------------ r515 | s0565918 | 2008-08-11 12:48:45 +0100 (Mon, 11 Aug 2008) | 1 line Added effective sample size to DiracMixturePdf, added fixed timestep Euler Maruyama for SDEs ------------------------------------------------------------------------ r514 | s0565918 | 2008-08-07 20:17:38 +0100 (Thu, 07 Aug 2008) | 1 line Updated Wiener process test given library changes ------------------------------------------------------------------------ r513 | s0565918 | 2008-08-07 20:17:22 +0100 (Thu, 07 Aug 2008) | 1 line Substantial numerical improvements after thorough testing with double well ------------------------------------------------------------------------ r512 | s0565918 | 2008-08-07 20:16:50 +0100 (Thu, 07 Aug 2008) | 1 line Wiener process simplified by removing non-standard drift and diffusion ------------------------------------------------------------------------ r511 | s0565918 | 2008-08-07 14:17:09 +0100 (Thu, 07 Aug 2008) | 1 line Updated for recent library changes ------------------------------------------------------------------------ r510 | s0565918 | 2008-08-07 14:16:46 +0100 (Thu, 07 Aug 2008) | 1 line Renamed StationarySampler to EquilibriumSampler for consistent terminology, removed relative error from AutoCorrelator ------------------------------------------------------------------------ r509 | s0565918 | 2008-08-06 19:01:11 +0100 (Wed, 06 Aug 2008) | 1 line Updated parameters after bug fixes ------------------------------------------------------------------------ r508 | s0565918 | 2008-08-06 19:00:40 +0100 (Wed, 06 Aug 2008) | 1 line Fixed bugs ------------------------------------------------------------------------ r507 | s0565918 | 2008-08-05 13:54:00 +0100 (Tue, 05 Aug 2008) | 1 line Hid helper classes in documentation ------------------------------------------------------------------------ r506 | s0565918 | 2008-08-05 13:36:54 +0100 (Tue, 05 Aug 2008) | 1 line Added GSL coupling todos, fixed outstanding numerical issues in Euler-Maruyama ------------------------------------------------------------------------ r505 | s0565918 | 2008-08-04 18:48:03 +0100 (Mon, 04 Aug 2008) | 1 line Added test for Euler-Maruyama ------------------------------------------------------------------------ r504 | s0565918 | 2008-08-04 18:47:21 +0100 (Mon, 04 Aug 2008) | 1 line Added initial Euler-Maruyama implementation ------------------------------------------------------------------------ r503 | s0565918 | 2008-08-04 15:04:41 +0100 (Mon, 04 Aug 2008) | 1 line Renamed kernel density particle resampler to standardise terminology, removed halving of order in step size adjustment for StochasticAdaptiveRungeKutta ------------------------------------------------------------------------ r502 | s0565918 | 2008-08-04 15:03:53 +0100 (Mon, 04 Aug 2008) | 1 line ------------------------------------------------------------------------ r501 | s0565918 | 2008-08-02 22:51:33 +0100 (Sat, 02 Aug 2008) | 1 line ------------------------------------------------------------------------ r500 | s0565918 | 2008-08-02 22:37:37 +0100 (Sat, 02 Aug 2008) | 1 line Updated test parameters ------------------------------------------------------------------------ r499 | s0565918 | 2008-08-02 22:37:16 +0100 (Sat, 02 Aug 2008) | 1 line Added partial class specialisation for special case of StochasticAdaptiveRungeKutta where diffusion derivatives are zero, much more efficient ------------------------------------------------------------------------ r498 | s0565918 | 2008-08-01 21:37:08 +0100 (Fri, 01 Aug 2008) | 1 line Changed default numerical scheme from 8/9 Prince-Dormand to 4/5 Runge-Kutta-Fehlberg, demonstrated better on fMRI and double well examples ------------------------------------------------------------------------ r497 | s0565918 | 2008-08-01 15:40:58 +0100 (Fri, 01 Aug 2008) | 1 line Propset ------------------------------------------------------------------------ r496 | s0565918 | 2008-08-01 15:40:29 +0100 (Fri, 01 Aug 2008) | 1 line Undid zero_matrix optimisations, not working... ------------------------------------------------------------------------ r495 | s0565918 | 2008-08-01 14:49:50 +0100 (Fri, 01 Aug 2008) | 1 line Added template metaprogramming to exclude diffusion derivatives calculation if zero matrix specified as type ------------------------------------------------------------------------ r494 | s0565918 | 2008-08-01 14:33:13 +0100 (Fri, 01 Aug 2008) | 1 line ------------------------------------------------------------------------ r493 | s0565918 | 2008-08-01 14:30:02 +0100 (Fri, 01 Aug 2008) | 1 line Added text file reader ------------------------------------------------------------------------ r492 | s0565918 | 2008-08-01 14:15:32 +0100 (Fri, 01 Aug 2008) | 1 line Added text file writer ------------------------------------------------------------------------ r491 | s0565918 | 2008-07-31 17:20:32 +0100 (Thu, 31 Jul 2008) | 1 line Updated for recent library changes ------------------------------------------------------------------------ r490 | s0565918 | 2008-07-31 17:20:07 +0100 (Thu, 31 Jul 2008) | 1 line Renamed ParticleDensitySmoother, updated filters and smoothers for MixturePdf and KDTree changes ------------------------------------------------------------------------ r489 | s0565918 | 2008-07-31 12:13:05 +0100 (Thu, 31 Jul 2008) | 1 line Updated propset on all sources ------------------------------------------------------------------------ r488 | s0565918 | 2008-07-31 12:11:42 +0100 (Thu, 31 Jul 2008) | 1 line Updated model to support KernelTwoFilterSmoother ------------------------------------------------------------------------ r487 | s0565918 | 2008-07-31 12:10:49 +0100 (Thu, 31 Jul 2008) | 1 line Included redistributeBySpace() in KernelDensityMixturePdf test ------------------------------------------------------------------------ r486 | s0565918 | 2008-07-31 12:10:04 +0100 (Thu, 31 Jul 2008) | 1 line Added redistributeBySpace() to DiracMixturePdf to facilitate distributed kd trees ------------------------------------------------------------------------ r485 | s0565918 | 2008-07-30 14:43:09 +0100 (Wed, 30 Jul 2008) | 1 line Updated kernel density tests to use dual-tree algorithms ------------------------------------------------------------------------ r484 | s0565918 | 2008-07-30 14:32:26 +0100 (Wed, 30 Jul 2008) | 1 line Collapsed kd tree to minimise virtual function use and alleviate derived pointer serialization headaches, implemented dual tree algorithm for kd mixtures ------------------------------------------------------------------------ r483 | s0565918 | 2008-07-28 14:20:58 +0100 (Mon, 28 Jul 2008) | 1 line Added test for KernelDensityMixturePdf ------------------------------------------------------------------------ r482 | s0565918 | 2008-07-28 13:17:15 +0100 (Mon, 28 Jul 2008) | 1 line Added median partitioner ------------------------------------------------------------------------ r481 | s0565918 | 2008-07-28 13:16:57 +0100 (Mon, 28 Jul 2008) | 1 line Fixed compile errors with assertions enabled ------------------------------------------------------------------------ r480 | s0565918 | 2008-07-28 12:43:22 +0100 (Mon, 28 Jul 2008) | 1 line Further optimisation of dual tree using non-virtuals ------------------------------------------------------------------------ r479 | s0565918 | 2008-07-28 00:53:18 +0100 (Mon, 28 Jul 2008) | 1 line Initial dual-tree implementation with some profiling optimisations ------------------------------------------------------------------------ r478 | s0565918 | 2008-07-24 23:39:52 +0100 (Thu, 24 Jul 2008) | 1 line Updated for new kd tree and mixture changes ------------------------------------------------------------------------ r477 | s0565918 | 2008-07-24 23:39:18 +0100 (Thu, 24 Jul 2008) | 1 line New index implementation of kd trees, improved mixture sampling with cumulative weights ------------------------------------------------------------------------ r476 | s0565918 | 2008-07-20 22:13:29 +0100 (Sun, 20 Jul 2008) | 1 line Added kernel two-filter smoother tests ------------------------------------------------------------------------ r475 | s0565918 | 2008-07-20 21:57:44 +0100 (Sun, 20 Jul 2008) | 1 line Initial kernel two-filter smoother implementation ------------------------------------------------------------------------ r474 | s0565918 | 2008-06-27 13:50:59 +0100 (Fri, 27 Jun 2008) | 1 line Corrected possible stochastic Runge-Kutta bug if proposed time step leaps several steps in the future sampled path, simplified implementation ------------------------------------------------------------------------ r473 | s0565918 | 2008-06-25 20:00:41 +0100 (Wed, 25 Jun 2008) | 1 line Fixed redistributeByWeight() bug when all weights equal ------------------------------------------------------------------------ r472 | s0565918 | 2008-05-30 16:12:07 +0100 (Fri, 30 May 2008) | 1 line Added matrix to vector conversion ------------------------------------------------------------------------ r471 | s0565918 | 2008-05-30 14:21:19 +0100 (Fri, 30 May 2008) | 1 line Added random generation of orthonormal matrices ------------------------------------------------------------------------ r470 | s0565918 | 2008-05-29 19:12:45 +0100 (Thu, 29 May 2008) | 1 line Dirac mixture standardisation now to identity covariance ------------------------------------------------------------------------ r469 | s0565918 | 2008-05-23 14:09:23 +0100 (Fri, 23 May 2008) | 1 line ------------------------------------------------------------------------ r468 | s0565918 | 2008-05-23 14:04:04 +0100 (Fri, 23 May 2008) | 1 line Line wrapping fixes ------------------------------------------------------------------------ r467 | s0565918 | 2008-05-21 13:56:43 +0100 (Wed, 21 May 2008) | 1 line Particle density smoother appears to be working, added expand and condense for Dirac mixtures for FixableStateModel ------------------------------------------------------------------------ r466 | s0565918 | 2008-05-17 01:34:40 +0100 (Sat, 17 May 2008) | 1 line New particle density filter working ------------------------------------------------------------------------ r465 | s0565918 | 2008-05-17 01:34:13 +0100 (Sat, 17 May 2008) | 1 line Update to use packed matrix form of Cholesky function ------------------------------------------------------------------------ r464 | s0565918 | 2008-05-17 01:33:40 +0100 (Sat, 17 May 2008) | 1 line Update to use packed matrix form of Cholesky function ------------------------------------------------------------------------ r463 | s0565918 | 2008-05-13 16:51:22 +0100 (Tue, 13 May 2008) | 1 line Added stationary sampler test ------------------------------------------------------------------------ r462 | s0565918 | 2008-05-13 16:50:32 +0100 (Tue, 13 May 2008) | 1 line Added stationary distribution sampler ------------------------------------------------------------------------ r461 | s0565918 | 2008-05-13 14:06:28 +0100 (Tue, 13 May 2008) | 1 line Updated for renamed autocorrelator ------------------------------------------------------------------------ r460 | s0565918 | 2008-05-13 13:39:04 +0100 (Tue, 13 May 2008) | 1 line Renamed autocorrelator ------------------------------------------------------------------------ r459 | s0565918 | 2008-05-13 01:25:12 +0100 (Tue, 13 May 2008) | 1 line Removed storage of Wiener trajectory history to fix memory leak ------------------------------------------------------------------------ r458 | s0565918 | 2008-05-13 00:55:06 +0100 (Tue, 13 May 2008) | 1 line Added plot for autocorrelation ------------------------------------------------------------------------ r457 | s0565918 | 2008-05-13 00:54:17 +0100 (Tue, 13 May 2008) | 1 line Review improvements ------------------------------------------------------------------------ r456 | s0565918 | 2008-05-12 22:33:32 +0100 (Mon, 12 May 2008) | 1 line Removed debugging output from autocorrelator ------------------------------------------------------------------------ r455 | s0565918 | 2008-05-12 22:28:06 +0100 (Mon, 12 May 2008) | 1 line Added autocorrelator test ------------------------------------------------------------------------ r454 | s0565918 | 2008-05-12 22:27:00 +0100 (Mon, 12 May 2008) | 1 line Added autocorrelator ------------------------------------------------------------------------ r453 | s0565918 | 2008-05-08 20:28:30 +0100 (Thu, 08 May 2008) | 1 line Fixed bug in dirty() ------------------------------------------------------------------------ r452 | s0565918 | 2008-05-06 17:47:15 +0100 (Tue, 06 May 2008) | 1 line Changed pm3d plots to image ------------------------------------------------------------------------ r451 | s0565918 | 2008-05-04 14:11:33 +0100 (Sun, 04 May 2008) | 1 line Removed unused variable ------------------------------------------------------------------------ r450 | s0565918 | 2008-05-03 20:32:12 +0100 (Sat, 03 May 2008) | 1 line Minor adjustments ------------------------------------------------------------------------ r449 | s0565918 | 2008-05-02 20:40:35 +0100 (Fri, 02 May 2008) | 1 line Minor changes ------------------------------------------------------------------------ r448 | s0565918 | 2008-05-01 17:11:33 +0100 (Thu, 01 May 2008) | 1 line Modified GSL adaptor for ODEs/SDEs to use polymorphism, attempting to work around Intel compiler internal error ------------------------------------------------------------------------ r447 | s0565918 | 2008-04-30 14:05:41 +0100 (Wed, 30 Apr 2008) | 1 line Corrected double well equation in documentation ------------------------------------------------------------------------ r446 | s0565918 | 2008-04-30 13:17:58 +0100 (Wed, 30 Apr 2008) | 1 line Updated for stochastic Runge-Kutta fixes ------------------------------------------------------------------------ r445 | s0565918 | 2008-04-30 13:01:00 +0100 (Wed, 30 Apr 2008) | 1 line Added kernel density mixtures, kernel density particle resampler ------------------------------------------------------------------------ r444 | s0565918 | 2008-04-29 19:23:46 +0100 (Tue, 29 Apr 2008) | 1 line Added standard deviation calculation and standardisation ------------------------------------------------------------------------ r443 | s0565918 | 2008-04-29 19:23:02 +0100 (Tue, 29 Apr 2008) | 1 line Major fixes to stochastic Runge-Kutta ------------------------------------------------------------------------ r442 | s0565918 | 2008-04-29 12:34:26 +0100 (Tue, 29 Apr 2008) | 1 line Minor changes ------------------------------------------------------------------------ r441 | s0565918 | 2008-04-28 00:42:38 +0100 (Mon, 28 Apr 2008) | 1 line Inlined some functions ------------------------------------------------------------------------ r440 | s0565918 | 2008-04-28 00:42:03 +0100 (Mon, 28 Apr 2008) | 1 line Updated given stochastic Runge-Kutta updates ------------------------------------------------------------------------ r439 | s0565918 | 2008-04-28 00:29:04 +0100 (Mon, 28 Apr 2008) | 1 line Added vector to matrix conversion ------------------------------------------------------------------------ r438 | s0565918 | 2008-04-28 00:24:32 +0100 (Mon, 28 Apr 2008) | 1 line Significant optimisations after profiling ------------------------------------------------------------------------ r437 | s0565918 | 2008-04-28 00:23:52 +0100 (Mon, 28 Apr 2008) | 1 line ------------------------------------------------------------------------ r436 | s0565918 | 2008-04-28 00:23:37 +0100 (Mon, 28 Apr 2008) | 1 line Fixed strange error reported by user ------------------------------------------------------------------------ r435 | s0565918 | 2008-04-28 00:22:18 +0100 (Mon, 28 Apr 2008) | 1 line Removed resize option from FixableStateModel, poor semantics ------------------------------------------------------------------------ r434 | s0565918 | 2008-04-28 00:21:06 +0100 (Mon, 28 Apr 2008) | 1 line Fixed strange error reported by user ------------------------------------------------------------------------ r433 | s0565918 | 2008-04-17 15:20:38 +0100 (Thu, 17 Apr 2008) | 1 line Fixed erronous state when same variable fixed twice ------------------------------------------------------------------------ r432 | s0565918 | 2008-04-14 15:59:10 +0100 (Mon, 14 Apr 2008) | 1 line Aliased fixVariable() as fix() for semantic reasons, deprecated fixVariable() ------------------------------------------------------------------------ r431 | s0565918 | 2008-04-14 15:58:55 +0100 (Mon, 14 Apr 2008) | 1 line Aliased fixVariable() as fix() for semantic reasons, deprecated fixVariable() ------------------------------------------------------------------------ r430 | s0565918 | 2008-04-14 15:57:59 +0100 (Mon, 14 Apr 2008) | 1 line Changed time arguments to const ------------------------------------------------------------------------ r429 | s0565918 | 2008-04-14 15:57:01 +0100 (Mon, 14 Apr 2008) | 1 line Added element sqrt ------------------------------------------------------------------------ r428 | s0565918 | 2008-04-14 15:56:34 +0100 (Mon, 14 Apr 2008) | 1 line Corrected banded_matrix not using column major layout ------------------------------------------------------------------------ r427 | s0565918 | 2008-04-14 15:55:53 +0100 (Mon, 14 Apr 2008) | 1 line Vectorization implementation compilation fixes ------------------------------------------------------------------------ r426 | s0565918 | 2008-04-14 15:02:36 +0100 (Mon, 14 Apr 2008) | 1 line Initial (untested) vectorization implementation ------------------------------------------------------------------------ r425 | s0565918 | 2008-04-07 20:55:38 +0100 (Mon, 07 Apr 2008) | 1 line Added destructor for Kernel ------------------------------------------------------------------------ r424 | s0565918 | 2008-04-07 20:55:06 +0100 (Mon, 07 Apr 2008) | 1 line Added vector element-wise exp and pow functions ------------------------------------------------------------------------ r423 | s0565918 | 2008-04-03 21:15:31 +0100 (Thu, 03 Apr 2008) | 1 line Updates for parallel testing of ParticleDensitySmoother ------------------------------------------------------------------------ r422 | s0565918 | 2008-04-03 21:11:33 +0100 (Thu, 03 Apr 2008) | 1 line Copy removal in rotate(), although no real performance improvement, perhaps was already optimised by compiler ------------------------------------------------------------------------ r421 | s0565918 | 2008-04-03 21:02:00 +0100 (Thu, 03 Apr 2008) | 1 line Removed iostream includes ------------------------------------------------------------------------ r420 | s0565918 | 2008-04-03 20:56:55 +0100 (Thu, 03 Apr 2008) | 1 line Fixes for parallel use of ParticleDensitySmoother and degenerate case of zero particles on a node ------------------------------------------------------------------------ r419 | s0565918 | 2008-04-02 17:41:10 +0100 (Wed, 02 Apr 2008) | 1 line Changes for performance tests ------------------------------------------------------------------------ r418 | s0565918 | 2008-04-02 17:35:26 +0100 (Wed, 02 Apr 2008) | 1 line Performance improvements ------------------------------------------------------------------------ r417 | s0565918 | 2008-04-02 17:32:09 +0100 (Wed, 02 Apr 2008) | 1 line Updated tests for recent changes ------------------------------------------------------------------------ r416 | s0565918 | 2008-04-02 17:31:24 +0100 (Wed, 02 Apr 2008) | 1 line Reviewed random number generation, used more advanced functions in GSL ------------------------------------------------------------------------ r415 | s0565918 | 2008-04-01 18:58:31 +0100 (Tue, 01 Apr 2008) | 1 line Performance improvements from profiling ------------------------------------------------------------------------ r414 | s0565918 | 2008-04-01 17:53:26 +0100 (Tue, 01 Apr 2008) | 1 line Removed obsolete resampling items from tests ------------------------------------------------------------------------ r413 | s0565918 | 2008-04-01 17:36:37 +0100 (Tue, 01 Apr 2008) | 1 line Added test for kernel density particle smoother ------------------------------------------------------------------------ r412 | s0565918 | 2008-04-01 17:33:54 +0100 (Tue, 01 Apr 2008) | 1 line Preliminary kernel density particle smoother implementation ------------------------------------------------------------------------ r411 | s0565918 | 2008-04-01 17:03:23 +0100 (Tue, 01 Apr 2008) | 1 line ------------------------------------------------------------------------ r410 | s0565918 | 2008-03-24 15:33:40 +0000 (Mon, 24 Mar 2008) | 1 line New kernel density tree implementation ------------------------------------------------------------------------ r409 | s0565918 | 2008-03-21 12:04:28 +0000 (Fri, 21 Mar 2008) | 1 line Fixed use of inv() changing original matrix A ------------------------------------------------------------------------ r408 | s0565918 | 2008-03-21 12:03:52 +0000 (Fri, 21 Mar 2008) | 1 line Added warning regarding inv() changing input matrix ------------------------------------------------------------------------ r407 | s0565918 | 2008-03-05 16:44:31 +0000 (Wed, 05 Mar 2008) | 1 line Removed detailed description from main page of docs, too much to update\! ------------------------------------------------------------------------ r406 | s0565918 | 2008-03-05 16:33:45 +0000 (Wed, 05 Mar 2008) | 1 line Fixed bug in weight redistribution when all nodes of equal weight in the first place ------------------------------------------------------------------------ r405 | s0565918 | 2008-03-05 15:05:55 +0000 (Wed, 05 Mar 2008) | 1 line Fixed latex error in documentation

  posted 386 days ago

• File released: /dysii/1.4.0/dysii-1.4.0.tar.gz

  posted 386 days ago

• dysii 1.3.0 file released: dysii-1.3.0.tar.gz

  posted 673 days ago

• File released: /dysii/1.3.0/dysii-1.3.0.tar.gz

  posted 673 days ago

• dysii 1.2.0 file released: dysii-1.2.0.tar.gz

  posted 767 days ago

• File released: /dysii/1.2.0/dysii-1.2.0.tar.gz

  posted 767 days ago