DyMMM

Dynamic Multispecies Metabolic Modeling framework

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Description

The Dynamic Multispecies Metabolic Modeling (DyMMM [dĭm]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework.

Please use the following citation for bibliographical purposes:
Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition between Rhodoferax and Geobacter in anoxic subsurface environments. The ISME journal.

Zhuang, K., Ma, E., Lovley, D. R., & Mahadevan, R. (2012). The design of long-term effective uranium bioremediation strategy using a community metabolic model. Biotechnology and Bioengineering.

DyMMM Web Site

Features

  • dynamic community metabolic modeling
  • cobra-toolbox integration
  • matlab integration

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User Reviews

  • dominiccook
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    small and efficient and gets the job done.

    Posted 10/27/2012
  • evanrivera
    1 of 5 2 of 5 3 of 5 4 of 5 5 of 5

    Easy to install and use.

    Posted 09/13/2012
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Additional Project Details

Intended Audience

Engineering, Science/Research

Programming Language

MATLAB

Registered

2012-05-15
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