denovo_solid_pipeline

Pipeline for small genome assembly using SOLiD sequencing technology

Add a Review
2 Downloads (This Week)
Last Update:
Download denovo_solid_pipeline_1.0.1.tar.gz
Browse All Files
Linux

Description

denovo_solid_pipeline (DSP) is a semi automated pipeline for short genome assembly using SOLiD sequencing data. The main features of the pipeline are the optimization of the number of read-correction runs and computational resources via dynamic programming. DSP also has the advantage over the currently available pipeline (denovo2) of generating more contigs suitable for further assembly steps, increasing the chances of detecting sequencing errors and/or polymorphic sites.

denovo_solid_pipeline Web Site

Update Notifications





Write a Review

User Reviews

Be the first to post a review of denovo_solid_pipeline!

Additional Project Details

Languages

English

Intended Audience

Science/Research

User Interface

Console/Terminal

Programming Language

Unix Shell

Registered

2012-10-30
Screenshots can attract more users to your project.
Features can attract more users to your project.

Icons must be PNG, GIF, or JPEG and less than 1 MiB in size. They will be displayed as 48x48 images.