CUDASW++ software is a public open source software for Smith-Waterman protein database searches on Graphics Processing Units with CUDA. This software have been added to the NVIDIA Tesla Bio Workbench (http://www.nvidia.com/object/swplusplus_on_tesla.html
This has NOT been updated for beyond CUDA 4.1. Cutil.h is no longer in CUDA since CUDA 5.0. Now here we are on CUDA 6.0! Please update this software.