cruxcat Icon

cruxcat

beta

analysis tool enables user to run differential expression on clusters

Add a Review
0 Downloads (This Week)
Last Update:

Screenshots

Description

Lightweight standalone software tool to enable molecular biologists, without bioinformatics support, to ask biological questions regarding to their CAGE data which can address the most relevant analysis questions.
cruXcat is focused on enabling data exploration of CAGE datasets on multiple computer platforms. The software imports expression tables and allows users to annotate CAGE clusters and discover differentially regulated clusters between user selected samples.
The nature of the work flow also allows for expression detection on tags clusters creating p-value, an estimate of how often we would observe the data, utilizing edgeR methodology with differential expression analysis of digital expression data.
(applies edgeR methods, therefore rJava Interface and proper R setup required)
Utilizing the Java platforms flexibility this standalone software will be compatible with multiple computer platforms such as Linux/Unix and Mac OS X. The software package comes with a detaile

cruxcat Web Site

Update Notifications





Write a Review

User Reviews

Be the first to post a review of cruxcat!

Additional Project Details

Languages

English, Japanese

Intended Audience

End Users/Desktop, Healthcare Industry, Information Technology, Science/Research

User Interface

Java Swing

Programming Language

Java

Registered

2012-10-23
Screenshots can attract more users to your project.
Features can attract more users to your project.

Icons must be PNG, GIF, or JPEG and less than 1 MiB in size. They will be displayed as 48x48 images.