Lightweight standalone software tool to enable molecular biologists, without bioinformatics support, to ask biological questions regarding to their CAGE data which can address the most relevant analysis questions.
cruXcat is focused on enabling data exploration of CAGE datasets on multiple computer platforms. The software imports expression tables and allows users to annotate CAGE clusters and discover differentially regulated clusters between user selected samples.
The nature of the work flow also allows for expression detection on tags clusters creating p-value, an estimate of how often we would observe the data, utilizing edgeR methodology with differential expression analysis of digital expression data.
(applies edgeR methods, therefore rJava Interface and proper R setup required)
Utilizing the Java platforms flexibility this standalone software will be compatible with multiple computer platforms such as Linux/Unix and Mac OS X. The software package comes with a detaile
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