codonPhyML
Description
codonPhyML uses Markovian codon models of evolution in phylogeny reconstruction. Given a set of species characterized by their DNA sequences as input, codonPhyML will return the phylogenetic tree that best describes their evolutionary relationship.
codonPhyML Web SiteFeatures
- Markovian codon models of evolution: Goldman & Yang 1994, Muse & Gaut 1994, Kosiol et al 2007, Schneider et al 2005, Yap et al 2010
- NNI and SPR tree topology search heuristic
- substitution rate parameters estimated by maximum likelihood
- multicore support through OpenMP
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