ChIP-RNA-seqPRO Icon

ChIP-RNA-seqPRO

ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)

Add a Review
2 Downloads (This Week)
Last Update:
Download ChIP-RNA-seqPRO.tar.gz
Browse All Files

Screenshots

Description

ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide.

ChIP-RNA-seqPRO Web Site

Features

  • Tool for comparative analysis of a broad variety of epigenomic (ChIPseq, MBDseq, etc.) and RNA-based sequencing paired sample datasets
  • If you use this tool or any of the annotation libraries please include the following reference: Champion M., Hlady R., Yan H., Evans J., Nie J., Lee J., Bogenberger J., Nandakumar K., Davila J., Moore R., Nair A., O'Brien D., Zhu Y., Kortüm K., Ordog T., Zhang Z., Joseph R., Kocher J., Jonasch E., Robertson K., Tibes R. and H. Ho T. (2015). Bioinformatics Strategies for Identifying Regions of Epigenetic Deregulation Associated with Aberrant Transcript Splicing and RNA-editing. In Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, pages 163-170. DOI: 10.5220/0005248001630170

KEEP ME UPDATED

Write a Review

User Reviews

Be the first to post a review of ChIP-RNA-seqPRO!

Additional Project Details

Intended Audience

Science/Research

Programming Language

Unix Shell, Python

Registered

2014-04-07
Screenshots can attract more users to your project.
Features can attract more users to your project.

Icons must be PNG, GIF, or JPEG and less than 1 MiB in size. They will be displayed as 48x48 images.