Cerulean: Hybrid Genome Assembler

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Cerulean Hybrid Genome Assembler v0.1

Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads.

Cerulean v0.1 has been implemented with bacterial genomes in mind. I hope to release next version by Novemver 2013 to support algal genomes of size ~100MB.

The method is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.7933.

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