bspipe

An End-to-End Analysis Pipeline for BS-seq

Add a Review
1 Download (This Week)
Last Update:
Download bspipe-1.0.tgz
Browse All Files
BSD Linux

Description

BSpipe is a comprehensive pipeline from sequence quality control and mapping to functional analysis of differentially methylated regions:
(1) sequencing quality assessment,
(2) sequence cleaning,
(3) sequence read mapping,
(4) methylation quantification,
(4) sample comparisons based on methylation profile,
(5) identification of DMRs (differentially methylated regions),
(6) annotation of DMRs,
(7) functional analysis of differentially methylated genes,
(8) generation of input files for visualization, and
(9) support for advanced sequencing technologies such as TAB-seq, OxBS-seq, MAP-it, and NOMe-seq.

bspipe Web Site

Update Notifications





Write a Review

User Reviews

Be the first to post a review of bspipe!

Additional Project Details

Intended Audience

Science/Research

User Interface

Command-line

Programming Language

Perl, S/R, Unix Shell

Registered

2013-03-20
Screenshots can attract more users to your project.
Features can attract more users to your project.

Icons must be PNG, GIF, or JPEG and less than 1 MiB in size. They will be displayed as 48x48 images.