The BioTools are complete BioInformatics programs.
Database Searching and Alignment Tools:
ProteinSearch - searches a list of protein FASTA databases with for protein sequences.
- this program can identify evolutionarily related sequences deep into
the twilight zone (as low as 5% sequence identity).
AlignHits - generates protein multiple sequence alignments from ProteinSearch results
- this program can align more than 20,000 protein sequences!
GenBankParser - GenBank source file parser; generates FASTA files
SwissProtParser - SwissProt source file parser; generates FASTA file
lengths.pl - summarizes the lengths of sequences in a FASTA sequences file.
Motifs.pl - identifies Prosite motifs in a protein FASTA sequences file.