C++ library for protein sequence profile to profile alignment. Implementing numerous known alignment variants in a flexible and manageable architecture.
- Make sequence to sequence alignment
- Make profile to sequence alignment
- Make profile to profile alignment
- Use three different weighting schemes in the construction of profiles
- Use eleven different scoring functions used in alignments against profile Profile
- Use structural information of various kinds
- Use of penalty functions for linear gap
- Perform global, local and semi-global alignments
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