BatchPD

BatchPD: Batch automation of a primer design pipeline for human genes

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Description

BatchPD is a primer design program developed to address the needs of clinical diagnostics laboratories to design primer oligos for PCR amplification against human gene exons, taking into account of SNPs where possible.

Research paper publication:
http://www.bioinformation.net/008/97320630008365.htm

BatchPD checks specificity via in-silico PCR, provide gene/exon specific relevant information summarised in an end spread-sheet; Primer design, PCR checks and other relevant information are queried from existing online tools with BatchPD acting as an intermediate to handle queries and results processing.

BatchPD interfaces with the following online bioinformatic resources:
* NCBI's GenBank
* USCS's Genome browser
* ExonPrimer

Optional extra SNP checks can be carried out via the web tool: SNPCheck.

BatchPD Uses the HtmlCleaner package:
http://htmlcleaner.sourceforge.net/

BatchPD Web Site

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Additional Project Details

Intended Audience

Science/Research

User Interface

Java Swing

Programming Language

Java

Registered

2012-04-18
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