BamBam

Tools for genomic analysis

Add a Review
1 Download (This Week)
Last Update:
Download bambam-1.3-beta.tgz
Browse All Files
BSD Linux

Description

BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more.

Depends on SAMtools (http://samtools.sourceforge.net/) and BAMtools (https://github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball.

BamBam Web Site

Categories

Bio-Informatics

License

MIT License

Features

  • call SNPs and indels
  • impute genotypes
  • build consensus sequences
  • tabulate counts of mapped reads (RNA-seq)
  • infer haplotype phasing with K-means clustering
  • analyze DNA methylation (bisulfite-sequencing)

Update Notifications





Write a Review

User Reviews

Be the first to post a review of BamBam!

Additional Project Details

Intended Audience

Science/Research

Programming Language

C++, Perl

Registered

2013-06-26

Icons must be PNG, GIF, or JPEG and less than 1 MiB in size. They will be displayed as 48x48 images.