by bingbingwang
ASpipe is a pipeline to process GeneSeqer/GMAP alignments and identify alternative splicing (AS) events from the alignments. It requires unix bash, perl 5.0+ with DBI module and MySQL5.0+ to run properly.
Version 2.1.5 Updated: Oct 17, 2008 Add "commit" to some insert syntax. As discovered on some machine, the insertion was done in buffer, another process started before the autocommit, which will cause wrong eTranscript prediction. Version 1.9 Updated: ...
A stable version of ASpipe (ASpipe2.1.5) is now available at SourceForge. The new version fixed previous minor bugs and added some new features including output in GFF format. An perl-cgi based browser (ASviewer) to visualize the ASpipe data is ...
Version 1.0.1 1/26/2007 (1) Updated ASpipe.pl, now write some important parameters to the log. (2) Updated GMAP_extract.pl, Fixed GMAP orientation confusion problem by reverse the genome strand when cDNA is antisense. See details in the script.
Anonymous committed patchset 1 of module CVSROOT to the ASpipe CVS repository, changing 11 files
bingbingwang registered the ASpipe project
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