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• File released: /aspipe/ASpipe2.1.5/ASpipe2.1.5.tar.gz

  posted 447 days ago

• aspipe ASpipe2.1.5 file released: ASpipe2.1.5.tar.gz

  Version 2.1.5 Updated: Oct 17, 2008 Add "commit" to some insert syntax. As discovered on some machine, the insertion was done in buffer, another process started before the autocommit, which will cause wrong eTranscript prediction. Version 1.9 Updated: May 21 2008 (1) library/AS.pl: Fixed a bug in AS.pl where some IntronR events was predicted wrong (2) library/MergeExon.pl Consider fuzzy border option, some terminal exons may have splicing site not predicted well (3) library/cluster.pl Restructure the algorithm of clustering EST alignments, merge single exon with its neighboring clusters. (4) library/GetDBSeq.pl, bin/ASpipe.pl Add a new 'Hybrid' method of retrieving genome sequences, requires fastacmd and formated genomic database. Reduced memory usage. (5) bin/ASIPtoGFF3.pl Assign ? as the orientation to single exon Version 1.8 Updated: May 15 2008 (1) Fixed known bugs as of May 15 2008 (2) Cross-species EST model incoporated (3) Read input from GFF format file (4) Output in GFF format file

  posted 447 days ago

• New version of ASpipe released

  A stable version of ASpipe (ASpipe2.1.5) is now available at SourceForge. The new version fixed previous minor bugs and added some new features including output in GFF format. An perl-cgi based browser (ASviewer) to visualize the ASpipe data is available upon request. Please cite the following paper if you are using ASpipe: (1) Wang, B.-B., O'Toole, M., Brendel, V. & Young, N.D (2008) BMC Plant Biology Cross-Species EST Alignments Reveal Novel and Conserved Alternative Splicing Events in Legumes (2) Wang, B.-B. and Brendel, V. (2006) PNAS Genome-wide comparative analysis of alternative splicing in plants

  posted by bingbingwang 455 days ago

• File released: /aspipe/ASpipe1.0.1/ASpipe1.0.1.tar.gz

  posted 969 days ago

• aspipe ASpipe1.0.1 file released: ASpipe1.0.1.tar.gz

  Version 1.0.1 1/26/2007 (1) Updated ASpipe.pl, now write some important parameters to the log. (2) Updated GMAP_extract.pl, Fixed GMAP orientation confusion problem by reverse the genome strand when cDNA is antisense. See details in the script.

  posted 969 days ago

• Code committed

  Anonymous committed patchset 1 of module CVSROOT to the ASpipe CVS repository, changing 11 files

  posted by nobody 1095 days ago

• Project Information Updated

  bingbingwang registered the ASpipe project

  posted by bingbingwang 1095 days ago

• Forum thread added

  Anonymous created the Welcome to Developers forum thread

  posted by nobody 1095 days ago

• Forum thread added

  Anonymous created the Welcome to Help forum thread

  posted by nobody 1095 days ago

• Forum thread added

  Anonymous created the Welcome to Open Discussion forum thread

  posted by nobody 1095 days ago