MarsBaR ROI toolbox for SPM

File Release Notes and Changelog

Release Name: 0.41

Notes: Release for SPM5 compatibility. See ChangeLog

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Changes: 2007-07-17 10:48 matthewbrett * release/pre_release.m: Adapted release script to sourceforge svn change 2006-10-13 17:27 matthewbrett * marsbar.m: Updated version number 2006-10-13 17:05 matthewbrett * examples/batch/run_tutorial.m, mars_img2rois.m, marsbar.m: Added spm version path check/remove, fixed img2rois syntax error, changed save location of data in tutorial script 2006-10-13 12:49 matthewbrett * examples/batch/README, examples/batch/run_preprocess.m, examples/batch/run_tutorial.m: README and update to scripts for SPM5 2006-07-29 11:36 matthewbrett * @marsy/summary_block_means.m: Fixed transpose resulting in error for more than one ROI 2006-07-17 17:49 matthewbrett * @mardo/cd_images.m, @mardo_2/private/pr_spm_ui.m, @mardo_99/private/pr_spm_ui.m, marsbar.m, spm5/spm_get.m: Reversed edits to pr_spm_ui, realizing that the bug was due to spm5 wrapper for spm_get 2006-07-12 15:32 matthewbrett * @mardo_2/private/pr_spm_ui.m, @mardo_99/private/pr_spm_ui.m: Fixed bug where use of 'length' on file selections returns number of chars not images 2006-05-03 12:28 matthewbrett * release/pre_release.m: Updated svn2cl.sh command suggestion 2006-05-03 12:20 matthewbrett * release/pre_release.m: Removed need for username, fixed syntax errors 2006-05-03 12:12 matthewbrett * release/pre_release.m: Updated release comments and command for subversion 2006-05-02 16:50 matthewbrett * mars_uifile.m: Avoid filter workaround for windows (?not necessary); update comments 2006-05-02 15:53 matthewbrett * mars_uifile.m, marsbar.m: Workarounds for bizarre intricacies in uigetfile in matlab 7 2006-04-04 13:22 matthewbrett * marsbar.m: Updated version to 0.40 2006-04-01 22:39 matthewbrett * @mardo_2/fill.m, mars_orthviews.m: Found some unsaved edits in vol compatability stuff 2006-04-01 22:21 matthewbrett * @mardo_2/convert_vols.m, @mardo_5/convert_vols.m, @mardo_99/convert_vols.m, mars_vol_utils.m: Fixed wrong guess about meaning of datatype vol flag; fixed image vol processing in convert_ols 2006-04-01 20:36 matthewbrett * @mardo/mardo.m, @mardo_2/fill.m, @mardo_2/mardo_2.m, @mardo_2/private/my_design.m, @mardo_2/private/pr_fmri_design.m, @mardo_2/private/pr_spm_diff.m, @mardo_2/private/pr_spm_get_bf.m, @mardo_2/private/pr_spm_ui.m, @mardo_5/autocorr.m, @mardo_5/convert_vols.m, @mardo_5/estimate.m, @mardo_5/fill.m, @mardo_5/mardo_5.m, @mardo_5/private, @mardo_5/private/my_design.m, @mardo_5/private/pr_estimate.m, @mardo_5/private/pr_fmri_design.m, @mardo_5/private/pr_fmristat_ar.m, @mardo_5/private/pr_get_filter.m, @mardo_5/private/pr_spm_cat.m, @mardo_5/private/pr_spm_ce.m, @mardo_5/private/pr_spm_diff.m, @mardo_5/private/pr_spm_en.m, @mardo_5/private/pr_spm_fileparts.m, @mardo_5/private/pr_spm_filter.m, @mardo_5/private/pr_spm_get_bf.m, @mardo_5/private/pr_spm_get_ons.m, @mardo_5/private/pr_spm_gpdf.m, @mardo_5/private/pr_spm_hrf.m, @mardo_5/private/pr_spm_justify.m, @mardo_5/private/pr_spm_logdet.m, @mardo_5/private/pr_spm_non_sphericity.m, @mardo_5/private/pr_spm_orth.m, @mardo_5/private/pr_spm_q.m, @mardo_5/private/pr_spm_reml.m, @mardo_5/private/pr_spm_select.m, @mardo_5/private/pr_spm_svd.m, @mardo_5/private/pr_spm_ui.m, @mardo_5/private/pr_spm_unvec.m, @mardo_5/private/pr_spm_vec.m, @mardo_5/private/pr_spm_volterra.m, @mardo_5/private/pr_stat_compute.m, @mardo_5/private/pr_stat_compute_mv.m, @mardo_5/type.m, @mardo_5/ui_build.m, @mardo_99/fill.m, @mardo_99/mardo_2.m, @mardo_99/private/pr_spm_ui.m, mars_build_roi.m, mars_image_scaling.m, mars_img2rois.m, mars_orthviews.m, mars_rois2img.m, mars_utils.m, marsbar.m, spm2/mars_veropts.m, spm5/mars_veropts.m, spm5/spm_get.m, spm99/mars_veropts.m: Implementing full SPM5 object, with design GUIs and all the stuff you guys will never use because you, like me, use SPM do to the batching. Hackish method of mardo_5 inheriting from mardo_2. Cleaned up lots of little SPM5 incompatibilities in spm_get calls, use of 'img' image extensions. Cleaned up some instances of SPM2 calls direct to SPM routines which differ for different versions or don't exist for SPM99 - changed to pr_spm versions. 2006-04-01 00:50 matthewbrett * @mardo/prefix_images.m, @maroi_matrix/do_write_image.m, mars_vol_utils.m: Update methods to use version independent vol routines 2006-04-01 00:01 matthewbrett * @mardo_5, @mardo_5/mardo_5.m, @mardo_5/native_vol_ver.m: Starting proper SPM5 design object 2006-04-01 00:01 matthewbrett * examples, examples/batch, examples/batch/configure_er_model.m, examples/batch/do_bch_wrapper.m, examples/batch/er_contrast_spm99.m, examples/batch/er_model_spm2.m, examples/batch/er_model_spm99.m, examples/batch/er_smooth.m, examples/batch/estimate_er_model.m, examples/batch/run_preprocess.m, examples/batch/run_s3_model.m, examples/batch/run_tutorial.m: Moved scripts for example data into marsbar distribution 2006-03-30 20:54 matthewbrett * @mardo/mardo.m, @mardo_2/mardo_2.m, @mardo_2/private/pr_fmri_design.m, @mardo_2/private/pr_spm_ui.m, @mardo_99/mardo_99.m, @mardo_99/private/pr_fmri_design.m, @mardo_99/private/pr_spm_ui.m, @marmoire/marmoire.m, @maroi/maroi.m, @marsy/marsy.m, mars_cvs_version.m: Got rid of CVS version checking - not using CVS 2006-03-30 11:16 matthewbrett * spm2/spm_create_image.m, spm5/mars_blob_ui.m, spm5/spm_create_image.m: Added SPM5 blob ui (copied from SPM2) 2006-03-30 01:22 matthewbrett * @mardo/cd_images.m, mars_vol_utils.m, spm5/spm_get.m: Added vol routines for byte swapping; fixed output args for spm_get wrapper 2006-03-30 00:58 matthewbrett * @mardo_2/private/pr_spm_ui.m, @mardo_99/private/pr_spm_ui.m, mars_vol.m: Gave up on mars_vol idea after automating conversion at load/save 2006-03-30 00:57 matthewbrett * mars_vol_utils.m: Cleanup / fixes for conversion 2006-03-30 00:56 matthewbrett * @mardo/full_vol.m, @maroi/getdata.m: Edits to use nice new mars_vol_utils routines 2006-03-30 00:54 matthewbrett * @mardo/savestruct.m, @mardo_2/convert_vols.m, @mardo_2/mardo_2.m, @mardo_2/save_spm.m, @mardo_2/savestruct.m, @mardo_99/convert_vols.m, @mardo_99/mardo_99.m, @mardo_99/save_spm.m: Enforce vol conversion on loading and saving of designs 2006-03-29 21:04 matthewbrett * @mardo/mardo.m, @mardo/native_vol_ver.m, mars_vol.m, mars_vol_utils.m, spm5/spm_get.m: spm99/spm5 volume utilities; fix to spm_get for empty args 2006-03-29 00:19 matthewbrett * @mardo_2/private/pr_spm_ui.m, @mardo_99/private/pr_spm_ui.m, mars_utils.m, mars_vol_utils.m: Working on compatability between spm99 and spm5 vol structs 2006-03-28 22:55 matthewbrett * spm99/spm_vol_check.m: Added vol check for running in spm99 2006-03-28 20:04 matthewbrett * @mardo_2/fwhm.m, @mardo_99/fwhm.m: fwhm extraction methods 2006-03-28 19:58 matthewbrett * @maroi/getdata.m: Edits to try and make maroi.getdata more agnostic about spm_vol format 2006-03-28 19:57 matthewbrett * mars_display_roi.m, marsbar.m: Added star at beginning of roi.mat selections for easier integration with spm5 2006-03-28 19:56 matthewbrett * spm5/spm_get.m: spm_get returning full paths, as does the spm2 version 2006-03-28 19:55 matthewbrett * @marsy/summary_block_means.m: Routine to provide raw means by block for data 2006-03-28 16:28 matthewbrett * @mardo/block_means.m, affichevol.m, fonct, init, marsbar.m, spm5, spm5/mars_veropts.m, spm5/spm_create_image.m, spm5/spm_get.m: marsbar.m 2005-07-07 00:10 matthewbrett * marsbar.m: *** empty log message *** 2005-07-06 00:58 matthewbrett * @mardo/mardo.m: Set flip option from marsbar options (previously options were ignored) 2005-07-06 00:32 matthewbrett * mars_options.m: Yes and no wrong way round for setting flip option 2005-07-01 21:51 matthewbrett * @mardo_2/save_spm.m, @mardo_99/save_spm.m: Avoid 'swd' as variable name - clashes with swd method name